Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla10g00504 ATGACCCACTTTATCGAACCCAAATTCCACCAAACCCCATTTCCCCTTCTCCGCCGCACTCCCAAATCTCCACCGCCCATCTCAATCCGATGCGGCAGTGCCACCCGCGAGCTCCGATCCCGACTGGACTCCATCAAGAACACCCAGAAGCTCACCGAAGCCATGAAACTCGTCGCCGCCGCTAAAGTCCGACGAGCCCAAGAAGCCGTAATCAACAGCCGCCCCTTCTCCCAATCTCTCGCCCAATTTCTCCATTTCATCATCCAACAAATCCAACGAGACGACATCGATTTCCCCTTTATAAACCCTAGACCCGTCAGGAAAGTCGCCGTCGTCGTCTTCACCGGCGATCGAGGCCTCTGCGGGGGCTTCAACGCTTCGGTAATAAAAAAAGCTGAGACCCGATTGACCGAATTGAAAAACCTCGATCTGGGTCACACCCTAATCAGCGTCGGGAAAAAGGGCAATTCGCATTTCCGCCACCGGTCCGATGTTGAAGTCGATCGGTTCATCACCGGCTGCGGCGGCGTTTCAGTACCCACTGCAAAAGAAGCTCAAGCCATAGCAGATATTGTGTTTTCTCTGTTCATTAGCGAAGAAGTGGACAAAGTGGAAGTAATTTACACAAAATTCGTTTCGTTGCTGAAATCCGTGCCTGTGATTGAGACATTGCTGCCATTGTTGGGGGAAGGGGAAGCCATGGGAGATGGAGGGTTTAGATTGACGACGGCGGAGGGGAAATTGAAAGTGGAGAGAGAGGGAAAAAGGGGGACATTAGGGGAAATTTCGCCATTGTTGGAGTTTGAACAAGACCCAGTTCAGATTTTGGATGGGATGATGGCTTTGTATTTGAACAGCCAGGTTTTGAGGGCTTTGCAGGAATCTATGGCGAGTGAAGTAGCGGCGAGGATGAATGCAATGAGTAATGCTTCTGAGAATGCAATGGAGTTGAAGAAATCTGTTTCGGTTGCTTATAATCGAGAGAGACAGGCCAAGATTACTGGGGAGATTTTGGAAATCGTTGCTGGAGCTGAGGCTCTCGAGGGATTTTGA 1053 50.43 MTHFIEPKFHQTPFPLLRRTPKSPPPISIRCGSATRELRSRLDSIKNTQKLTEAMKLVAAAKVRRAQEAVINSRPFSQSLAQFLHFIIQQIQRDDIDFPFINPRPVRKVAVVVFTGDRGLCGGFNASVIKKAETRLTELKNLDLGHTLISVGKKGNSHFRHRSDVEVDRFITGCGGVSVPTAKEAQAIADIVFSLFISEEVDKVEVIYTKFVSLLKSVPVIETLLPLLGEGEAMGDGGFRLTTAEGKLKVEREGKRGTLGEISPLLEFEQDPVQILDGMMALYLNSQVLRALQESMASEVAARMNAMSNASENAMELKKSVSVAYNRERQAKITGEILEIVAGAEALEGF 350
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 6687108 6688160 - ClCG10G005390.1 Cla10g00504 282163
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla10g00504 350 CDD F1-ATPase_gamma 35 344 IPR000131 GO:0015986|GO:0045261|GO:0046933
Cla10g00504 350 PANTHER ATP SYNTHASE GAMMA CHAIN 9 348 IPR000131 GO:0015986|GO:0045261|GO:0046933
Cla10g00504 350 PANTHER ATP SYNTHASE GAMMA CHAIN, CHLOROPLASTIC-LIKE 9 348 - -
Cla10g00504 350 Hamap ATP synthase gamma chain [atpG]. 32 347 IPR000131 GO:0015986|GO:0045261|GO:0046933
Cla10g00504 350 Gene3D ATP synthase, gamma subunit, helix hairpin domain 242 347 - -
Cla10g00504 350 Gene3D ATP synthase, gamma subunit, helix hairpin domain 33 102 - -
Cla10g00504 350 Gene3D - 103 228 - -
Cla10g00504 350 SUPERFAMILY ATP synthase (F1-ATPase), gamma subunit 35 347 IPR035968 GO:0015986|GO:0045261|GO:0046933
Cla10g00504 350 Pfam ATP synthase 35 347 IPR000131 GO:0015986|GO:0045261|GO:0046933
Cla10g00504 350 PRINTS ATP synthase gamma subunit signature 106 125 IPR000131 GO:0015986|GO:0045261|GO:0046933
Cla10g00504 350 PRINTS ATP synthase gamma subunit signature 202 219 IPR000131 GO:0015986|GO:0045261|GO:0046933
Cla10g00504 350 PRINTS ATP synthase gamma subunit signature 294 313 IPR000131 GO:0015986|GO:0045261|GO:0046933
Cla10g00504 350 PRINTS ATP synthase gamma subunit signature 325 346 IPR000131 GO:0015986|GO:0045261|GO:0046933
Cla10g00504 350 TIGRFAM ATPsyn_F1gamma: ATP synthase F1, gamma subunit 35 347 IPR000131 GO:0015986|GO:0045261|GO:0046933
Cla10g00504 350 ProSitePatterns ATP synthase gamma subunit signature. 333 346 IPR023632 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla01g02144 Cla-Chr1:35626557 Cla10g00504 Cla-Chr10:6687108 1.40E-150 dispersed
Cla04g01157 Cla-Chr4:26756680 Cla10g00504 Cla-Chr10:6687108 3.82E-32 dispersed
Cla10g00504 Cla-Chr10:6687108 Cla03g00441 Cla-Chr3:5010091 4.24E-151 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla10g00504 K02115 - csv:101214682 608.986