Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla10g00512 ATGAAGCAGAAATTCAAATCCAAGAAGTCTGGCAAGCAGAAGCGACTATCCGAAATTGAAGAAATTGAGCTCTTAAATTCATGGATTGAATCACAGAAACCTGACTCAGGCTCCAATCCTATGTCGCTCCCTCCGCCGCCCGCGAATGCCCCCGTTGGCCGTATCGATGCCGATACCTACTCTCGTTACGCTGGAGCGACGAGGTTTGACCAGTTGCCGATTTCGAGCAAGACCAAAGATGGGTTGCGCAAAGCTGAGTTCGTTGACATGACTGACATACAGAAGGCTTCACTGCCTCACGCGCTTTGTGGTCGAGATATTCTTGGTGCAGCTAAAACTGGTTCAGGAAAGACGCTAGCGTTTCTCATACCTGTTCTTGAAAAATTGTATAGAGAGAGATGGGGTCCTGAGGCTGGAGTAGGGAGTATAATAATATCTCCCACAAGAGAATTAGGAGCTCAGCTGTTTGATGTATTGAAAGCTGTAGGAAAATTTCATAATTTCAGTGCTGGCCTTTTAATTGGTGGTCGTAAAGATATTAACACTGAGAAGGAGCACGTGAATGAGTTGAACATTCTTGTTTGCACTCCTGGTCGACTCCTTCAGCATATGGATGAGACTCCAAATTTTGATTGTTCACAGCTTCAGGTTTTAGTCCTTGATGAAGCAGATCGTATTCTTGATGTTGGATTTAAGAAGACTTTAAATGCTATTGTCTCACAGCTACCTAAGCGTAGACAAACCTTTCTGTTCTCAGCAACTCAAACGAAGTCTGTTCAGGATCTTGCAAGACTCAGTTTGAAAGATCCTGAGTACCTTAGTGTCCATGCAGAATCTGTGACTGCCACACCCAATAGTCTACAGCAAACTGCTATGGTTGTTCCTCTCGAGCAGAAGCTGGACATGAAATCTCATATTAAACATATTACTTTTTGTTCCATAACGTTTCCAATTCCTGATACCCTCTGTGGCTCTGGCTTTCTTTGGAGTGGAGAAGAGAACTCTGTTCCTGCAAGTTTCTACATGATCACCTATCTGCTAGACGAAAGGATGAAGCAGGACAAAAGGATGGGGATATATTCTGCATTCTGTGAGAAGCGCTCAGTTCTCTTCTCAACAGATGTAGCCTCTAGAGGTCTTGATTTTAATAAGGCTGTTGACTGGGTTGTACAGGTTGATTGCCCAGAAGATGTGGCTTCTTACATACATAGAGTTGGTCGCACTGCCCGGTATCATTCAGGTGGGAGATCAGTTTTATTTATTATGCCCTCGGAAATGAAAATGCTTGAACGATTGGAATCAGCCAAAGTACCTATTCAGCTTATCAAGGCGAATACAAAAAGACTTCAACCAGTTTCTGGTTTGCTGTCAGCCTTGTTAGTCAAGTACCCTAATTTTCAGCAACTTGCCCAAAGGGCCTTTATCACATATCTTCGGTCAATTCATATCCAGAAGGATAAGGAAATATTTGATGTTATGAAACTGTCAATTGACGATTTTTCAGCTTCATTGGGGTTGCCAATGACCCCAAAAATTCGTTTCATTGATCAGAAAAGGAGGTCGCAGAAGATGTCTGCTAATCCTACCACTTTTCTTGCATTGGAATCGTCAGGTAACGAGAATGTTTTCAGTATGTCAGATGGAGAATTGGAGTATGGTGACTTTAAAGAAAGCAACCAAGGACTTCTTCCACCTATTGATACCCATTCTAGTGAAGTTGAAGATGCTGTGCCACCTACTCGGATTTTGAAGAAGATGAAGTTAAAGATCAATGTCCACAGGCCAGTAGGGACTAGAGTCAGTTTTGATGATGATGGCAACCCACTTGCCCCTCTAGCTAGGTTAGCTGACATCAAGGGTAGCAATGAGACATTTGTAGTCGATAAAGGTATGCCTTCTTACTTACTACATAGCAAACGCAAACTAGTGGTATCTTACAGTGAACATCAAAAAAATGAGTTTTACAAAAAGAGGAGGGAAGAGTTAAAACAAGCTGACAAGGAAGACAAACTTCTCAATCGTAATCGTCTTAAAGAGAAGCGGAAGGAGAAGATGAATAAGATGAAGAAGAGGGCCGCCAAAGAAAGTCAGGACGAAGAAGATGACGTTTCTGGGTCTGAAGAAGAAAGGCCTCAGAAAAGGTCCAAGAAATTTGTTGACAGTGATAGTGATATTGACAATAAAGTAGAAAACAACTTCAATACAAAGTCCATTTCAGTGGCAGAACAAGAGGAGTTGGCTCTCAAATTATTGAGTACTTTGCAACCATAA 2271 42.14 MKQKFKSKKSGKQKRLSEIEEIELLNSWIESQKPDSGSNPMSLPPPPANAPVGRIDADTYSRYAGATRFDQLPISSKTKDGLRKAEFVDMTDIQKASLPHALCGRDILGAAKTGSGKTLAFLIPVLEKLYRERWGPEAGVGSIIISPTRELGAQLFDVLKAVGKFHNFSAGLLIGGRKDINTEKEHVNELNILVCTPGRLLQHMDETPNFDCSQLQVLVLDEADRILDVGFKKTLNAIVSQLPKRRQTFLFSATQTKSVQDLARLSLKDPEYLSVHAESVTATPNSLQQTAMVVPLEQKLDMKSHIKHITFCSITFPIPDTLCGSGFLWSGEENSVPASFYMITYLLDERMKQDKRMGIYSAFCEKRSVLFSTDVASRGLDFNKAVDWVVQVDCPEDVASYIHRVGRTARYHSGGRSVLFIMPSEMKMLERLESAKVPIQLIKANTKRLQPVSGLLSALLVKYPNFQQLAQRAFITYLRSIHIQKDKEIFDVMKLSIDDFSASLGLPMTPKIRFIDQKRRSQKMSANPTTFLALESSGNENVFSMSDGELEYGDFKESNQGLLPPIDTHSSEVEDAVPPTRILKKMKLKINVHRPVGTRVSFDDDGNPLAPLARLADIKGSNETFVVDKGMPSYLLHSKRKLVVSYSEHQKNEFYKKRREELKQADKEDKLLNRNRLKEKRKEKMNKMKKRAAKESQDEEDDVSGSEEERPQKRSKKFVDSDSDIDNKVENNFNTKSISVAEQEELALKLLSTLQP 756
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 6782473 6790875 + ClCG10G005470.2 Cla10g00512 282171

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla10g00512 756 SMART DUF4217_3 451 514 IPR025313 -
Cla10g00512 756 SMART helicmild6 334 412 IPR001650 -
Cla10g00512 756 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 98 273 IPR014001 -
Cla10g00512 756 MobiDBLite consensus disorder prediction 30 52 - -
Cla10g00512 756 MobiDBLite consensus disorder prediction 706 729 - -
Cla10g00512 756 Pfam DEAD/DEAH box helicase 91 262 IPR011545 GO:0003676|GO:0005524
Cla10g00512 756 Coils Coil 667 709 - -
Cla10g00512 756 MobiDBLite consensus disorder prediction 665 679 - -
Cla10g00512 756 MobiDBLite consensus disorder prediction 665 738 - -
Cla10g00512 756 Gene3D - 54 279 IPR027417 -
Cla10g00512 756 CDD DEADc_DDX10 78 276 - -
Cla10g00512 756 Pfam Helicase conserved C-terminal domain 345 411 IPR001650 -
Cla10g00512 756 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 213 428 IPR027417 -
Cla10g00512 756 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 60 275 IPR027417 -
Cla10g00512 756 Pfam Domain of unknown function (DUF4217) 456 512 IPR025313 -
Cla10g00512 756 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 67 95 IPR014014 GO:0003724
Cla10g00512 756 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 295 450 IPR001650 -
Cla10g00512 756 PANTHER ATP-DEPENDENT RNA HELICASE DDX10-RELATED 58 301 - -
Cla10g00512 756 PANTHER ATP-DEPENDENT RNA HELICASE DDX10-RELATED 347 541 - -
Cla10g00512 756 SMART ultradead3 86 290 IPR014001 -
Cla10g00512 756 PANTHER RNA HELICASE 58 301 - -
Cla10g00512 756 PANTHER RNA HELICASE 347 541 - -
Cla10g00512 756 CDD SF2_C_DEAD 351 421 - -
Cla10g00512 756 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 219 227 IPR000629 -
Cla10g00512 756 Gene3D - 289 450 IPR027417 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla10g00512 K14776 DDX10, DBP4; ATP-dependent RNA helicase DDX10/DBP4 [EC:3.6.4.13] - csv:101213480 1167.91
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla07g00432 Cla-Chr7:5826784 Cla10g00512 Cla-Chr10:6782473 5.85E-67 dispersed
Cla10g00512 Cla-Chr10:6782473 Cla09g00899 Cla-Chr9:9304154 1.61E-55 dispersed
Cla11g00123 Cla-Chr11:1570377 Cla10g00512 Cla-Chr10:6782473 1.15E-47 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g503 . . . . Bpe09g00180 . . Bma13g01054 . . . . . . . . . . . . . . . . Cla10g00512 Cam10g0507 Cec10g0524 Cco10g0511 Clacu10g0528 Cmu10g1354 Cre10g0758 . . Cone14ag1140 Cone15ag1158 . Csa03g00520 . Cme06g02259 . Blo10g00825 . Bda12g00904 . . . . Sed14g0162 . . Cma04g00948 . . . . Cpe01g00859 Bhi11g00629 Tan01g1698 Cmetu12g0970 . . Mch10g1261 . . . . . . . . Lsi05g00605 . Chy06g01810 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010643 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 2 1 32
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla10g00512 Cla_Chr10 FPKM 1.585047 1.257392 6.396798 6.713668 2.828082 3.225874 2.476825 6.676382 6.471882 5.522266