Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla10g00515 ATGGACGACGGCGGAACACCGATGGATGACCGGAGAACACCAACGACAACGTGGAGTGGCAGAACACAGTCGATTTCGACTTTGGCGGAGGGTTTCAGTATTAGGTTTGGATACAAGTGCATCCGATCCGAACAACGATCAGAAATCGGAGTGAAAATGAGGAGGAGACCTGGCATTGGAGGCTTACAGACAGCTGCGGCGGCCAGGGACCAATACCGCCAGCTGGGTGAAAATGTAGCGAAGCTCAGAACCGATATGATGAAGGAGCAGCTCTCCACCTTTCGATCTCAGTTAGAGGATTTCGCTCGCAAACACAAGAAAGATATCAGTAAGAACCCGGCTTTCAGATCACAGTTCCATGAAATGTGTGCTAAAGTTGGAGTAGATCCCTTGGCCTCAAACAAGGGGTTTTGGGCAGAGCTATTAGGCATTGGTGATTTTTATTACGAGATTGGAGTGCAAATTGTTGACATTTGCTTGTCTACAAGACCCCACAATGGAGGTTTGATTAGCTTACAAGAACTGTGTACTTTGCTTCGGCAGAGACGAAAAAGTGATCGTGAAGCTGTGTCTGAGGATGACTGCCTGCGAGCTATAAGTAAACTGAAGATATTAGGAAGTGGCTTTGAAGTAATTACTGTTGGCAGGAAAAAACTTGTTCGGTCTGTTCCGACCGAATTGAACAAAGATCACAATGAAATTCTTGAGCTTGCGCAGGCTCAAGGCTATGTGACTGTTGATGAGGTAGAGAGACGACTTTCTTGGACATCTGGTCGTGCAGTTGATGCCCTCGATACTCTCCTGGATGAAGGTCTTGCGATGATTGATGATGGCCACCGTGATGGTAGACGTCGCTATTGGTTTCCTTGTGTTTCTCCTATCTCATCTTCTTTCACTACTGATGCCTAA 909 46.75 MDDGGTPMDDRRTPTTTWSGRTQSISTLAEGFSIRFGYKCIRSEQRSEIGVKMRRRPGIGGLQTAAAARDQYRQLGENVAKLRTDMMKEQLSTFRSQLEDFARKHKKDISKNPAFRSQFHEMCAKVGVDPLASNKGFWAELLGIGDFYYEIGVQIVDICLSTRPHNGGLISLQELCTLLRQRRKSDREAVSEDDCLRAISKLKILGSGFEVITVGRKKLVRSVPTELNKDHNEILELAQAQGYVTVDEVERRLSWTSGRAVDALDTLLDEGLAMIDDGHRDGRRRYWFPCVSPISSSFTTDA 302
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 6796419 6802153 - ClCG10G005500.2 Cla10g00515 282174

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla10g00515 302 Coils Coil 65 85 - -
Cla10g00515 302 SUPERFAMILY Winged helix DNA-binding domain 76 226 IPR036390 -
Cla10g00515 302 MobiDBLite consensus disorder prediction 1 20 - -
Cla10g00515 302 Gene3D - 224 302 IPR036388 -
Cla10g00515 302 Gene3D - 76 137 - -
Cla10g00515 302 Pfam EAP30/Vps36 family 58 277 IPR040608 -
Cla10g00515 302 SUPERFAMILY Winged helix DNA-binding domain 227 290 IPR036390 -
Cla10g00515 302 PANTHER EAP30 SUBUNIT OF ELL COMPLEX 53 293 IPR016689 GO:0000814|GO:0071985
Cla10g00515 302 Gene3D - 143 223 IPR036388 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla10g00515 K12188 SNF8, EAP30; ESCRT-II complex subunit VPS22 - csv:101213237 494.582
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g485 . . . Bda09g00393 . . . . . . . . . . . . . . . . . . . . Cla10g00515 Cam10g0510 Cec10g0527 Cco10g0514 Clacu10g0531 Cmu10g1357 Cre10g0761 . . Cone14ag1137 Cone15ag1155 . . . Cme06g02263 . . . . Bpe11g00537 . Bma07g01304 . Sed13g1172 . . . . . . . . Bhi11g00631 Tan01g1694 Cmetu06g0852 . . Mch10g1257 . . . . . . . . . . Chy06g01807 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012198 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 29
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla10g00515 Cla_Chr10 FPKM 23.047495 25.754499 20.373634 24.426588 12.805568 11.605431 13.772114 14.448837 13.739571 14.263115