Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla10g00517 ATGGATGAACTTAAAATGTCTTCGATTTCCTACGAATCCGATCGGCCGGTAGTTTCTGACCCAAAATGCGAAGCCGTTATTAAATCTGATGGGAATCGGAATGAGAACAAGAATGTGAATTTCTTAAGATTCATGGAGGAACTTGATGCTCAAATTGCTCGGTTTCAGCATAGGCGGTTTGGTATTGCGCAACTGCCACCAGAAATTGGGAAGCTCTGGACAGAGACGCGTGAGAAACGCCTAATTTGGCTCAACAAGCTTTCTGAGAATGGCGGAAATAGCCACTCACACCATCCTTCTCAAATTAGCAAATTTGACTCAGTCTCTCTCGATTCCAAACTTGGAGGGTTTCCTACTGCAACAAAGAAGAAAAACAAGCTTCATGATAGCAGTCGGCGAAGGTACATAACTGAGGAGATAAAAAAGTTAGGAAAAGGAAACATCTCTGCTCAAATTTTTACATTTTGTGAGCTATCTACGGCTACAAATAACTTCAACCACGAAAATCTGTTGGGGGAAGGTGGTTTTGGAAGGGTTTACAAAGGCGTCATTGAAAGCACACAACAAATAACGGCCGTGAAGCAACTTGACCGAAATGGATTTCAAGGAAACAGAGAATTCCTTGTAGAGGTTTTGATGTTGAGCCTTCTTCACCATCCTAATCTTGTGAATTTGGTTGGGTATTGTGCTGATGGGGATCAGAGAATTTTGGTTTATGAGTACATGGCTAAAGGTTCCTTGGAGGATCATCTTCTTGATATAGCATCAGATAAGCCACCTCTGGACTGGAAGACAAGGATGAAAATTGCCGAAGGAGCGGCAAAAGGACTTGAATACTTGCACGAAACTGCTAATCCTCCTGTGATATACCGTGATTTCAAAGCTTCAAACATATTGTTGGACGAGGAATTCAATCCAAAGCTCTCTGATTTTGGTCTTGCAAAGTTAGGTCCTACTGGGGACAAATCTCATGTTTCCACTAGGGTGATGGGAACCTATGGTTACTGTGCTCCTGAATATGCACTTACAGGACAATTGACGACGAAATCAGATGTCTATAGTTTTGGTGTTGTGTTTCTGGAGATTATAACTGGAAGAAGGGTTATAGACAATGCAAGACCAACAGCAGAACAAAATTTAATTACTTGGGCACAACCACTTTTCAAAGACAGAAGGAAATTTACCCTAATGGCAGATCCAAAGCTAGAAGGAAATTATCCAGTGAAGGCTCTGTATCAAGCTTTGGCAGTGGCAGCCATGTGTTTACAAGAGGAAGCGGGTACTCGACCATTGATCAGCGACGTGGTTACGGCCCTTGAATATTTAGCTGCAAACAAGGATGTCGATGCAGACGTAGATGATGAATCAGATTCAGGATCGGTATTGGGATCGGGATCAGATTCAGCTTCTCGTGATAGAAGTAGTAACAATGGAGATAAAAATGTTGATGTTGAGGGTGATGGGAGGTGA 1470 42.31 MDELKMSSISYESDRPVVSDPKCEAVIKSDGNRNENKNVNFLRFMEELDAQIARFQHRRFGIAQLPPEIGKLWTETREKRLIWLNKLSENGGNSHSHHPSQISKFDSVSLDSKLGGFPTATKKKNKLHDSSRRRYITEEIKKLGKGNISAQIFTFCELSTATNNFNHENLLGEGGFGRVYKGVIESTQQITAVKQLDRNGFQGNREFLVEVLMLSLLHHPNLVNLVGYCADGDQRILVYEYMAKGSLEDHLLDIASDKPPLDWKTRMKIAEGAAKGLEYLHETANPPVIYRDFKASNILLDEEFNPKLSDFGLAKLGPTGDKSHVSTRVMGTYGYCAPEYALTGQLTTKSDVYSFGVVFLEIITGRRVIDNARPTAEQNLITWAQPLFKDRRKFTLMADPKLEGNYPVKALYQALAVAAMCLQEEAGTRPLISDVVTALEYLAANKDVDADVDDESDSGSVLGSGSDSASRDRSSNNGDKNVDVEGDGR 489
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 6839670 6847223 + ClCG10G005520.2 Cla10g00517 282176
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla10g00517 489 Gene3D Transferase(Phosphotransferase) domain 1 242 461 - -
Cla10g00517 489 ProSiteProfiles Protein kinase domain profile. 165 442 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cla10g00517 489 PANTHER OS07G0668900 PROTEIN 124 469 - -
Cla10g00517 489 ProSitePatterns Serine/Threonine protein kinases active-site signature. 288 300 IPR008271 GO:0004672|GO:0006468
Cla10g00517 489 ProSitePatterns Protein kinases ATP-binding region signature. 171 194 IPR017441 GO:0005524
Cla10g00517 489 SUPERFAMILY Protein kinase-like (PK-like) 149 437 IPR011009 -
Cla10g00517 489 MobiDBLite consensus disorder prediction 450 489 - -
Cla10g00517 489 MobiDBLite consensus disorder prediction 473 489 - -
Cla10g00517 489 Pfam Protein kinase domain 166 435 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cla10g00517 489 PANTHER OS07G0668900 PROTEIN 124 469 - -
Cla10g00517 489 CDD STKc_IRAK 171 440 - -
Cla10g00517 489 Gene3D Phosphorylase Kinase; domain 1 123 241 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla06g00172 Cla-Chr6:2009391 Cla10g00517 Cla-Chr10:6839670 7.65E-164 dispersed
Cla09g00999 Cla-Chr9:10519636 Cla10g00517 Cla-Chr10:6839670 1.02E-119 dispersed
Cla09g01000 Cla-Chr9:10529411 Cla10g00517 Cla-Chr10:6839670 6.26E-06 dispersed
Cla10g00517 Cla-Chr10:6839670 Cla10g01964 Cla-Chr10:35470374 5.06E-166 dispersed
Cla10g01256 Cla-Chr10:27421745 Cla10g00517 Cla-Chr10:6839670 2.21E-94 dispersed
Cla10g01655 Cla-Chr10:32235033 Cla10g00517 Cla-Chr10:6839670 6.73E-54 dispersed
Cla10g00517 Cla-Chr10:6839670 Cla05g00626 Cla-Chr5:5770602 2.28E-177 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
80844 PF00069 Pkinase 1.00E-46 CL0016 Cla PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla10g00517 - - csv:101212756 650.588