Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla10g00525 ATGTGGAGGGACGCTGGAGCTCCTGCTGATTCTTTCTATGAGGTTCGCCCTGAGTGCACCGATGTTCCCAAAACCCGTTTCAAGATCAGGGCGGGGAAAACCTTAAGTGTTAGAAAATGGCAAGCAGCATTTAATCCCGAAGGGCAACTGGACATATCTAAGACTCTAAATCGCATCCATCGTGGGGGGATCCATCCTTCAATCAGAGGAGAAGTTTGGGAATTTCTTCTTGGTTGTTATGATCCTATGAGTACCTTCGAGGAAAGAGAAGAAATTCGCCAGCGTCGAAGGATAGAGTATGCCACTTGGAAGGAAGACTGTCGACAAATGTTTCCTGTCATTGGAAGTGGTAGATACATCACAGCTCCTGTAATCACAGAGGATGGTCAGCCTATTCATGATCCGCTTGTACTCTTGGAAACAAATCCGGAGAAAGGTCCGGCTGTACCTCAAGATACTGGCACTGCTGATGCCAATTCGGATGGTTCACGGTTAACTTCTTCTAATAATATGGAAACTGTGAAGGATCCAAAAATAATTCAGTGGATGCTTACCTTACATCAGATAGGTCTTGATGTGGTTCGGACTGACAGAACATTGGTATTCTATGAAAAGCAAGAAAACTTGTCAAAACTTTGGGATATTCTTGCTGTTTATGCCTGGATAGATAAAGACGTTGGATACTGTCAAGGAATGAGTGATCTTTGTTCCCCCATGATAATGCTTCTTGAGGATGAAGGCGATGCATTTTGGTGCTTTGAACGTTTGATGCGCAGATTGATGTTAGTCTACATATTATGGTGTGGAGTTTTACTAAACGGTTTTTCTGTCTCTTCATCAACTGCTCAAGTTCTTTACGTAACAAAATACACTTCTACCTGCTATCCTCATGGTGCATTTCTATTTGAAATTTTAAAGCGAGGGAATTTCAGATGCACTGATAACTCTGTCGGTGTGGAGACTCAACTCAGTAATTTGGCTGCTATCACACAAGTCATTGATCCAAAACTTCATCAGCACTTAGGTATTGCTCATAGACTCATACTTTACATAAAGATATTCAGCTTTATGAGATATTACACTAGAGCTGATGATTTTAGTTTGGTTTCTTTTAATCTGCAGATTATAGAGAATCCCCATGCTTTTGTTCCATTAAACTTCACTTTTCTGAAAGTAACAAATGAAAGTGTTCTTTTTATGTACACAGAGACACTTGGCGGTGGAGATTATCTTTTTGCTTTCAGGATGCTTATGGTTTTGTTCCGTCGAGAGTTTTCCTTTTGTGATTCCTTGTATCTCTGGGAGATGATGTGGGCCCTGGAATATGATCCTGATCAGTTCGCGATATATGAAGAACCTGATATGGGCAATGAGAAAGGCGAGGGATCAAAAGGAAGAGCAAAATCGATACGTCAATTTGGGAAATATGAGAGGGAGAACTTGAAAGCAAAGAACTCACAAGCTCCTCTTCCAATCTCTGTTTTCCTTGTTGCTAGTGTCTTGAAAGATAAGAGCACAAAGCTACTTACAGAAGCTCGGGGTCTGGACGATGTTGTGAAGATATTAAATGACATGACTGGAAATCTGGATGCCAAAAAAGCTTGCACTGGGGCTATGAAGCTTCACAAGAAATATCTAAAAAAGGCCAAGAAGGCATAG 1659 41.17 MWRDAGAPADSFYEVRPECTDVPKTRFKIRAGKTLSVRKWQAAFNPEGQLDISKTLNRIHRGGIHPSIRGEVWEFLLGCYDPMSTFEEREEIRQRRRIEYATWKEDCRQMFPVIGSGRYITAPVITEDGQPIHDPLVLLETNPEKGPAVPQDTGTADANSDGSRLTSSNNMETVKDPKIIQWMLTLHQIGLDVVRTDRTLVFYEKQENLSKLWDILAVYAWIDKDVGYCQGMSDLCSPMIMLLEDEGDAFWCFERLMRRLMLVYILWCGVLLNGFSVSSSTAQVLYVTKYTSTCYPHGAFLFEILKRGNFRCTDNSVGVETQLSNLAAITQVIDPKLHQHLGIAHRLILYIKIFSFMRYYTRADDFSLVSFNLQIIENPHAFVPLNFTFLKVTNESVLFMYTETLGGGDYLFAFRMLMVLFRREFSFCDSLYLWEMMWALEYDPDQFAIYEEPDMGNEKGEGSKGRAKSIRQFGKYERENLKAKNSQAPLPISVFLVASVLKDKSTKLLTEARGLDDVVKILNDMTGNLDAKKACTGAMKLHKKYLKKAKKA 552
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 6951220 6956868 + ClCG10G005620.1 Cla10g00525 282184

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla10g00525 552 MobiDBLite consensus disorder prediction 143 168 - -
Cla10g00525 552 SUPERFAMILY Ypt/Rab-GAP domain of gyp1p 398 545 IPR035969 -
Cla10g00525 552 PANTHER - 400 551 - -
Cla10g00525 552 Gene3D - 389 552 - -
Cla10g00525 552 PANTHER - 1 266 - -
Cla10g00525 552 PANTHER - 311 342 - -
Cla10g00525 552 MobiDBLite consensus disorder prediction 153 168 - -
Cla10g00525 552 Gene3D putative rabgap domain of human tbc1 domain family member 14 like domains 167 264 - -
Cla10g00525 552 Pfam Rab-GTPase-TBC domain 167 261 IPR000195 -
Cla10g00525 552 PANTHER TBC1 DOMAIN FAMILY MEMBER GTPASE-ACTIVATING PROTEIN 1 266 - -
Cla10g00525 552 PANTHER TBC1 DOMAIN FAMILY MEMBER GTPASE-ACTIVATING PROTEIN 400 551 - -
Cla10g00525 552 SUPERFAMILY Ypt/Rab-GAP domain of gyp1p 38 265 IPR035969 -
Cla10g00525 552 SMART tbc_4 60 464 IPR000195 -
Cla10g00525 552 PANTHER TBC1 DOMAIN FAMILY MEMBER GTPASE-ACTIVATING PROTEIN 311 342 - -
Cla10g00525 552 ProSiteProfiles TBC/rab GAP domain profile. 63 441 IPR000195 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla10g00525 - - - qsu:111989415 630.557
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla05g00990 Cla-Chr5:9946572 Cla10g00525 Cla-Chr10:6951220 2.08E-08 dispersed
Cla09g00786 Cla-Chr9:7957435 Cla10g00525 Cla-Chr10:6951220 2.12E-159 dispersed
Cla10g00525 Cla-Chr10:6951220 Cla11g00297 Cla-Chr11:3418479 5.58E-07 dispersed
Cla10g00525 Cla-Chr10:6951220 Cla01g00022 Cla-Chr1:149529 2.91E-15 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g459 . . . . Bpe09g00186 . Bma10g00537 Bma13g01036 Cmo16g00908 . . . . . . . . . . . . . . . Cla10g00525 Cam10g0520 Cec10g0537 Cco10g0527 Clacu10g0542 Cmu10g1368 Cre10g0770 Cone6ag0083 Cone9ag0098 . . Lsi02g01909 Csa03g00532 . Cme06g02277 . Blo10g00812 Bda05g00732 Bda12g00897 . Bpe03g00801 . . Sed07g1928 . . . Cma16g00851 . Car16g00853 . Cpe01g00856 Bhi11g00647 Tan01g1682 Cmetu06g1724 . . Mch10g1229 . . . . . . . . Lsi05g00620 . . Cme01g01052
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004197 2 1 1 2 2 1 2 1 1 0 1 1 2 1 1 2 1 2 1 1 1 1 1 1 1 1 1 6 2 1 42
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla10g00525 Cla_Chr10 FPKM 44.917969 46.018036 0.809629 0.680244 1493.206299 1105.126099 1314.614014 0.906009 0.302363 0.566656