Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla10g00537 CGGAGCGGAGGGGACGAATCTCTCATCCCGACGACTACCCGCCACCAGTTCTGTCTAATATTCCCCAAATCCGATTCACATTCTCCATTTTTCTTTCTCCTATCGCCATTAAAATTTCACCTTCAACCCAACTCTGTCACACTCCTCAACGCTGACCCCTTTCTCCGCTCTTTCGCTTTACCCCTTTCAATTCCAACAGAACTCAACCTGGAAACATCTCCCTTCCTGCTGAATCCCCATCCCCATCCCCATCCCCATCATCCCGATATGGTTTCCCCTGAAACCACCAATTGGCTCTTTGATTATGCGTTAATGGATGATATTCCTGTTTCCGATGCCAATTTCTCTCCACCCACTACCGGCTTTTCCTGGTCTATGACTCCCCTCAACGGCTCCGCCAATGTCAGCACGGAAATTGAAGGATCACTGCTAGAATCGGATGGCCTGAAGGAGCCTGGTTCAAAGAAGAGGGTCAGAACTGAATCAAGTTGTGCATCTAGCTCGAAAGCCTGTAGGGAAAAGCTGCGGAGGGACAGACTAAATGACAAGTTTCTCGAATTGGGCGCTATTCTGGAGCCAGGTAGACCACCTAAGACCGACAAGGCTGCCATTTTGATCGATGCTGTCCGGATGGCTGAAAAGAATGAGCTTCGTGATGAGAAACAGAGGTTAAAAGTGGAGAAGGAGAAGTTGGAACAGCAACTAAAAGCCATGAATTCACAACCTGGCTTCTTGCCTCCAGCCATCCCTGCCACTTTTGCTGCTCAAGGCCAAGCACCTGGAAACAAGTTGGTTCCTTTCATCGGCTACCCCGGAGTTGCCATGTGGCAGTTCATGCCACCTGCAGCAGTCGACACCTCACAAGAT 867 49.83 RSGGDESLIPTTTRHQFCLIFPKSDSHSPFFFLLSPLKFHLQPNSVTLLNADPFLRSFALPLSIPTELNLETSPFLLNPHPHPHPHHPDMVSPETTNWLFDYALMDDIPVSDANFSPPTTGFSWSMTPLNGSANVSTEIEGSLLESDGLKEPGSKKRVRTESSCASSSKACREKLRRDRLNDKFLELGAILEPGRPPKTDKAAILIDAVRMAEKNELRDEKQRLKVEKEKLEQQLKAMNSQPGFLPPAIPATFAAQGQAPGNKLVPFIGYPGVAMWQFMPPAAVDTSQD 289
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 7161537 7165075 + ClCG10G005740.1 Cla10g00537 282196
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla10g00537 289 Coils Coil 210 241 - -
Cla10g00537 289 PANTHER TRANSCRIPTION FACTOR ILR3 212 289 - -
Cla10g00537 289 PANTHER TRANSCRIPTION FACTOR ILR3 90 211 - -
Cla10g00537 289 Pfam Helix-loop-helix DNA-binding domain 168 210 IPR011598 GO:0046983
Cla10g00537 289 PANTHER BHLH TRANSCRIPTION FACTOR 212 289 IPR044818 GO:0003700|GO:0006355|GO:0046983|GO:0055072
Cla10g00537 289 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 169 241 IPR036638 GO:0046983
Cla10g00537 289 CDD bHLH_AtILR3_like 172 236 - -
Cla10g00537 289 PANTHER BHLH TRANSCRIPTION FACTOR 90 211 IPR044818 GO:0003700|GO:0006355|GO:0046983|GO:0055072
Cla10g00537 289 SMART finulus 170 223 IPR011598 GO:0046983
Cla10g00537 289 Gene3D - 167 243 IPR036638 GO:0046983
Cla10g00537 289 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 164 215 IPR011598 GO:0046983
Cla10g00537 289 MobiDBLite consensus disorder prediction 144 168 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla02g00814 Cla-Chr2:10782991 Cla10g00537 Cla-Chr10:7161537 1.39E-67 dispersed
Cla06g01597 Cla-Chr6:29512829 Cla10g00537 Cla-Chr10:7161537 1.04E-08 dispersed
Cla10g00537 Cla-Chr10:7161537 Cla03g00482 Cla-Chr3:5344976 5.74E-39 dispersed
Cla10g00537 Cla-Chr10:7161537 Cla05g01539 Cla-Chr5:25681619 2.28E-90 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
61849 PF00010 HLH 1.60E-08 No_clan Cla TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla10g00537 - - pper:18778871 303.523