Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla10g00559 ATGGCGGAGGAGTTTCAGAGCACTGGAAACTGGTGGGAGGCTTCTAGAAATCGCTACGAAGCCGGAATATCCCCTTCCTCCTCCTCCATCACCACCTTCGTCGACCACTCCGACTCCGCCGCCGCCGCCGCCGCCTCCGATCCCAATTTGCACATCATGGGCTTAGGCCTCGATTGGAATCAACCCCTCTTTAGGGGCGGCGGAGAGAAGGCGGCGGAGGGAAGTTTCCGGTCGATGCTACAGCCGGAAAATATGAATTTAAATATGCAAGAAACAGGGCAGCAGCAGCAGCAACAGATTCAATGGATGAGATCGGAGAAGCTATATTCAGGAGAGTCTCCGGCGACCGAATTTAAGGCAATAAACAGAGGATTTTCATTAGATCATCATCAAGCTCAACCCCAGTTCAGTAGCCCTTCTCACTACAGCTCCGGTGACAGTACCGTCACCAGTTTTCCGATCGACACCGCCGCCAATTTATACGGAAATTCCGCAACATTATTACAAGGCTTATTAGCCAGCGGCGGGGAGCAGCAGCAGCAACAGCAACAACAACAACAAGTCTCAGCGGCTGTAGGTATGAACTACCCTTACAATTCCCATTTCGGAATGAACTCCGGCGAGTTAATGGCGGGAGGAGCGTCGTGGTCGCCGTCTAAAGTGCCTCAGTTTTTAAGAAACTCACCGCCAAAAGGGGCGGCGGCGGCAACTCCACATAGTCAGTTACAATTTTCGAACAACACGGCGTTCTGGAACGCGTCGGATATGAAAGACGTGAGACCCAGTTATTTTCCGGCGTCGTACAACACCGCTGCAGGTTTCGCCGATAAATCAAAGGTAAAAAAGAAAAAAAAGAAAAAGAAAAAGAAAAAGAAAAGAGTGATGATTAGGAATATATCGGAGGTTGGTGATTCGGTAACAACAGTAGGAAAAAAAAGTGGAAATGATCACAATCAGCAATCCGCCGCTGCTAAAAGGCCTCGAAATGAAACTCCTTCGCCATTGCCAGCTTTTAAGGTGAGGAAAGAGAAGATGGGGGACAGAATCACTGCGCTCCAACAACTCGTTTCACCTTTCGGAAAGACTGATACAGCCTCAGTGCTGTCTGAAGCAATTGAATACATAAAGTTCCTCCATGAACAAGTCAGTGTTTTGAGCACTCCATATTTGAAGAGTGGAGCTGCAGTACAGCAACAACATCAGCAGCAGGTAAAAAGATGTGAGAAATCAAAGGAAGGAGAAGGAGGAAAGCAAGATCTAAGAAGCAGAGGGCTTTGTTTAGTTCCAGTTTCAAGTACATTTCCAGTCACTCACGAAACCACAGTTGATTTTTGGACTCCAACCTTCGGAGGAACTTTCAGATAA 1365 47.91 MAEEFQSTGNWWEASRNRYEAGISPSSSSITTFVDHSDSAAAAAASDPNLHIMGLGLDWNQPLFRGGGEKAAEGSFRSMLQPENMNLNMQETGQQQQQQIQWMRSEKLYSGESPATEFKAINRGFSLDHHQAQPQFSSPSHYSSGDSTVTSFPIDTAANLYGNSATLLQGLLASGGEQQQQQQQQQQVSAAVGMNYPYNSHFGMNSGELMAGGASWSPSKVPQFLRNSPPKGAAAATPHSQLQFSNNTAFWNASDMKDVRPSYFPASYNTAAGFADKSKVKKKKKKKKKKKKRVMIRNISEVGDSVTTVGKKSGNDHNQQSAAAKRPRNETPSPLPAFKVRKEKMGDRITALQQLVSPFGKTDTASVLSEAIEYIKFLHEQVSVLSTPYLKSGAAVQQQHQQQVKRCEKSKEGEGGKQDLRSRGLCLVPVSSTFPVTHETTVDFWTPTFGGTFR 454
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 7928896 7934053 - ClCG10G005940.2 Cla10g00559 282218
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla10g00559 454 MobiDBLite consensus disorder prediction 305 327 - -
Cla10g00559 454 PANTHER TRANSCRIPTION FACTOR BHLH123 30 444 - -
Cla10g00559 454 Gene3D - 339 412 IPR036638 GO:0046983
Cla10g00559 454 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 329 378 IPR011598 GO:0046983
Cla10g00559 454 MobiDBLite consensus disorder prediction 305 335 - -
Cla10g00559 454 CDD bHLH_AtbHLH_like 335 386 IPR045239 -
Cla10g00559 454 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 339 393 IPR036638 GO:0046983
Cla10g00559 454 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 30 444 - -
Cla10g00559 454 SMART finulus 340 384 IPR011598 GO:0046983
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla03g00494 Cla-Chr3:5494876 Cla10g00559 Cla-Chr10:7928896 6.22E-44 dispersed
Cla05g01913 Cla-Chr5:30987631 Cla10g00559 Cla-Chr10:7928896 9.74E-27 dispersed
Cla06g00874 Cla-Chr6:13313256 Cla10g00559 Cla-Chr10:7928896 2.80E-33 dispersed
Cla07g01443 Cla-Chr7:31685269 Cla10g00559 Cla-Chr10:7928896 5.11E-33 dispersed
Cla10g00559 Cla-Chr10:7928896 Cla11g00072 Cla-Chr11:987682 3.79E-34 dispersed
Cla10g00559 Cla-Chr10:7928896 Cla01g02186 Cla-Chr1:35906597 2.47E-69 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla10g00559 - - csv:101220471 667.922