Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla10g00572 ATGGCTTCACATTACAAAATCTTATTCTTTTCCATAACCCTTTTCTCAATTCTTTCAAATATCTCTGGTAATAATACCATTAACAAATGGTGCAAAACCACGCCACATCCAAAAGTTTGCATTTCCTTCATGTCCCCAATCAAACCTCCACCACTAAACCGACCGGAGTTTCGAACAATGGCCATTAGAACCGCTTTCGAAAAAGCCGTCGAGGCTCAAAATTATGCAACCCGGTTTGGTCCGAGCTGTAAAACCACGCGCCAGAGAGCCGCGTGGACTGACTGTTTGAAGCTCTACAACGACGTCGTTTTCCAATTAAACCGTACCCTCCAATGCGTTCTTAGCGACGGAACAATCCAACGCCGCCGTTGTACGGATTTCGATGCGCAAACGTGGCTTAGCTCTGCTCTTACTGACATCGATTTGTGCCTCTCCGGCGCGGCGGATCTCAATGTGACGGATTTTATAGCTCCGATCAAATGCCAGAATGTTTCCAAGATGATTAGTAATTGCTTGGCCATTAATGGGGTATTTTTAAAAGAAGGGGTTAAAAGTGTAAATAGAATCGGAGTGGAGTTTGATCAAAATGGATCGTTTCCTATGTGGGTTTCGGATGGTGATCGGAAATTGTTGCAGTCGTCCGCTAAGGTGAGGGCTAATTTGGTGGTGGCGAAAGATGGGTCTGGGAAATTTCGGACGGTTCAGGCGGCGATCGATGCGGCGGCGAGGAGGCGTGGGAGGGGGCGATTTGTAATTTATGTAAAACGAGGGGTTTATAGAGAAAATATTGAAGTTGGGAATGATAATGGGAATTTAATGTTGGTGGGAGATGGGATGAGATTTACTGTGATTACAAGTGGAAGAAGCGTCGCCGCCGGCTTCACCACCTTCAGTTCTGCAACCGCTGGGATTCAAGGTCCAGGCTTCATCGCTCGAGACATAAGGTTCGTAAACACAGCCGGTCCACGAATGGGCCAAGCAGTTGCACTACGATCATCCTCGGACCTATCTGTGTTCCATCGATGCAGCTTCGAGGGCTACCAAGACACTCTAATGGTACTCTCACAAAGACAATTCTACAAACAATGTTACATTTACGGTACAATTGACTTCATCTTTGGGAACGCAGCAGTAGTTTTACAAAATTGCATGATTTACGTAAGGAGGCCTTTAAAGGGCCAAGTCAATGTCATAACTGCCCAAGGCCGAGAGGACCCGTTTCAGAACAGCGGAATCTCCATCCACAACTCTCAAATACGAGCCGCTGCTGATTTGCGGCCCATGATTGGCTCGGTTAAGACGTACATGGGTCGGCCCTGGAAGAAGTATTCGCGGACAGTCATTATGAGAAGCTACATTGATAGCTTGGTCAGCCCAGCCGGGTGGTTGGCGTGGCAAAAAAGTAAATTTGCTCAAGCTACGTTGTATTATGGGGAGTATCGTAATATTGGGCCTAGGGCTTCCACACGGTTTAGAGTCAAATGGCCGGGTTTTCATGTTATTAGAAGCCCAAATGTGGCTTCTAAGTTCACTGTCCAGAGACTCATCGCCGGCCAAACTTGGCTTCCGGCCACCGGAGTTCCCTTCAAGCTTGGCCTATGA 1602 47.32 MASHYKILFFSITLFSILSNISGNNTINKWCKTTPHPKVCISFMSPIKPPPLNRPEFRTMAIRTAFEKAVEAQNYATRFGPSCKTTRQRAAWTDCLKLYNDVVFQLNRTLQCVLSDGTIQRRRCTDFDAQTWLSSALTDIDLCLSGAADLNVTDFIAPIKCQNVSKMISNCLAINGVFLKEGVKSVNRIGVEFDQNGSFPMWVSDGDRKLLQSSAKVRANLVVAKDGSGKFRTVQAAIDAAARRRGRGRFVIYVKRGVYRENIEVGNDNGNLMLVGDGMRFTVITSGRSVAAGFTTFSSATAGIQGPGFIARDIRFVNTAGPRMGQAVALRSSSDLSVFHRCSFEGYQDTLMVLSQRQFYKQCYIYGTIDFIFGNAAVVLQNCMIYVRRPLKGQVNVITAQGREDPFQNSGISIHNSQIRAAADLRPMIGSVKTYMGRPWKKYSRTVIMRSYIDSLVSPAGWLAWQKSKFAQATLYYGEYRNIGPRASTRFRVKWPGFHVIRSPNVASKFTVQRLIAGQTWLPATGVPFKLGL 533
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 8230132 8233078 + ClCG10G006080.1 Cla10g00572 282231
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla10g00572 533 PANTHER PECTINESTERASE 7 532 - -
Cla10g00572 533 PANTHER PECTINESTERASE/PECTINESTERASE INHIBITOR 59-RELATED 7 532 - -
Cla10g00572 533 CDD PMEI-like_3 30 180 - -
Cla10g00572 533 Pfam Plant invertase/pectin methylesterase inhibitor 26 174 IPR006501 GO:0004857
Cla10g00572 533 ProSitePatterns Pectinesterase signature 2. 365 374 IPR033131 -
Cla10g00572 533 Gene3D - 214 533 IPR012334 -
Cla10g00572 533 Gene3D Invertase/pectin methylesterase inhibitor family protein 22 177 IPR035513 -
Cla10g00572 533 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 24 178 IPR035513 -
Cla10g00572 533 ProSitePatterns Pectinesterase signature 1. 246 265 IPR018040 -
Cla10g00572 533 SMART PMEI_2 22 174 IPR006501 GO:0004857
Cla10g00572 533 TIGRFAM PME_inhib: pectinesterase inhibitor domain 8 176 IPR006501 GO:0004857
Cla10g00572 533 SUPERFAMILY Pectin lyase-like 217 532 IPR011050 -
Cla10g00572 533 Pfam Pectinesterase 220 518 IPR000070 GO:0030599|GO:0042545
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla10g00572 Cla-Chr10:8230132 Cla01g00045 Cla-Chr1:336726 3.00E-136 dispersed
Cla10g00572 Cla-Chr10:8230132 Cla05g00797 Cla-Chr5:7768370 0 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla10g00572 K01051 - csv:101213944 919.457