Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla10g00585 ATGTGTTCTAAAGTATCAGTAGTTCCAAGCTCTTTGGATGTGGCTCGAAGGTCTGCCCAATTTGAAGCTAGTGTTTGGGGAGATTACTTTCTTTCCTATCATTCTCTTCCTCCAGAACAAGCCAACAAGTCGACGGAGAGACAGATGGAAGAATTGAAAGAAGAAATAAAAAGTCAGTTACTGATTACTACAACAAAAGATAACATTGAGAAATTAAAACTCATCGATTCAATTCAACGCTTAGGCGTTTCTTACCATTTCGAAACTGAGATCCACAAAGTTCTTCAACAACTTTATCATAATAGTGCTCAACATGATAATGACCTTCACACTATGACTCTCCGATTCATACTTCTTAGGCAACAAGGCTACAACATATCATCCCAGCCTTTCGATAAGTTTCGAGGCAAATGGGGAAGTTCATATAATAACAATAATGTAGAAGAACTCTTGAGTTTATACGAAGCATCGCAATTGAGGATGCGAGGAGAGGAAGCATTGGACGAAGCATTTTGTTTTGCTACCGCTCAGTTGGAAGCCATTGTCGGAGACTCTGCCACCGATACAACGGTTGCAGCGGAAGTTCGCCGTGCTTTGAAGTGGCCGCTGTACAAGAATCTGCCAAGGCTTGAAGCCAGACACTACATTGGTTTGTTCAGCGAGAAGCCATGGAGGAATGAGAGTTTGCTTAACTTTGCAAAGATGAATTTCAACCAATTGCAAAAACTTCATCAGAAAGAGATTGCTTACATCTCAAAGTGGTGGGAAGATTATGGATTTGCAGAAAAGCTATCATTTGCAAGGAACAGGATTGTGGAGGGATATTTTTTTGCTCTTGGGATATTCTTTAAACCTCAATTTTTAAGTGCCAGACTTATTATGACCAAAATCGTTGCTATTGGGTCAATGTTAGATGATATTTATGATGTTTATGGCACATTTGAAGAACTCAAACTCTTGACCCTTGCACTTGAGAGATGGGACAAGAGTGAGACAGACCAACTCCCAAATTATATGAAGATGTACTACGAGGCTTTGTTGGATGTTTTCGAAGAAATTGAAGAAGAAATGAGGCAGCAGAAAACAACACCATTTTGCATCCATCACATGAAAGAAGCGACAAAAGAGTTAGGAAGGGTATTTTTGGTAGAGGCAAAATGGTGTAAGGAAGGATACACACCAACTATGGAAGAATACTTGGATATTGCTTTGACATCTTTTGGCCACAAATTGCTTATGGTAACAGCCCTTTTGGGAATGGGAGATTTGGCCACACAACATGCTGTTCAATGGCTCATCTCCATGCCTAATATTCTCAAGGCCTCCACTGTTATTTGTAGGCTCATGAACGACATTGTTTCGCATAAGAATCGTACGTTGGAATACGATGCTCTAAATGCATTACACAAACAAATTGATGATTCGTGGAAGGATATGGTTGAGAATTTTTGTGTTATCACCACAGAAAATCAGATTCCAAGGGCTGTTCTTATGAGAGTTTTGAACCTCACAAGATTATTTAATGTGATTTACAAAGATGGAGATGGTTATACGCAATCCCAAGGCTCCACAAAAACTCATATAAAATCTTTGCTTGTAGACTCTGTCCCACTCTAA 1617 39.52 MCSKVSVVPSSLDVARRSAQFEASVWGDYFLSYHSLPPEQANKSTERQMEELKEEIKSQLLITTTKDNIEKLKLIDSIQRLGVSYHFETEIHKVLQQLYHNSAQHDNDLHTMTLRFILLRQQGYNISSQPFDKFRGKWGSSYNNNNVEELLSLYEASQLRMRGEEALDEAFCFATAQLEAIVGDSATDTTVAAEVRRALKWPLYKNLPRLEARHYIGLFSEKPWRNESLLNFAKMNFNQLQKLHQKEIAYISKWWEDYGFAEKLSFARNRIVEGYFFALGIFFKPQFLSARLIMTKIVAIGSMLDDIYDVYGTFEELKLLTLALERWDKSETDQLPNYMKMYYEALLDVFEEIEEEMRQQKTTPFCIHHMKEATKELGRVFLVEAKWCKEGYTPTMEEYLDIALTSFGHKLLMVTALLGMGDLATQHAVQWLISMPNILKASTVICRLMNDIVSHKNRTLEYDALNALHKQIDDSWKDMVENFCVITTENQIPRAVLMRVLNLTRLFNVIYKDGDGYTQSQGSTKTHIKSLLVDSVPL 538
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 8526476 8534618 - ClCG10G006210.1 Cla10g00585 282244

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla10g00585 538 Gene3D Farnesyl Diphosphate Synthase 245 538 IPR008949 -
Cla10g00585 538 Coils Coil 343 363 - -
Cla10g00585 538 SUPERFAMILY Terpenoid cyclases/Protein prenyltransferases 23 222 IPR008930 -
Cla10g00585 538 Gene3D - 38 244 IPR036965 GO:0010333|GO:0016829
Cla10g00585 538 SUPERFAMILY Terpenoid synthases 225 538 IPR008949 -
Cla10g00585 538 PANTHER OS04G0344100 PROTEIN-RELATED 3 538 - -
Cla10g00585 538 PANTHER ALPHA-HUMULENE/(-)-(E)-BETA-CARYOPHYLLENE SYNTHASE 3 538 - -
Cla10g00585 538 Pfam Terpene synthase, N-terminal domain 26 199 IPR001906 GO:0010333|GO:0016829
Cla10g00585 538 Pfam Terpene synthase family, metal binding domain 230 467 IPR005630 GO:0000287|GO:0010333|GO:0016829
Cla10g00585 538 CDD Terpene_cyclase_plant_C1 16 534 IPR044814 GO:0010333|GO:0016102
Cla10g00585 538 Coils Coil 42 62 - -
Cla10g00585 538 SFLD Isoprenoid Synthase Type I 226 536 - -
Cla10g00585 538 SFLD Terpene Cyclase Like 1 C Terminal Domain 226 536 IPR034741 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla10g00585 K15803 GERD; (-)-germacrene D synthase [EC:4.2.3.75] K23172 csv:101211540 856.67
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla10g00585 Cla-Chr10:8526476 Cla10g00588 Cla-Chr10:8655015 2.63E-143 dispersed
Cla10g00585 Cla-Chr10:8526476 Cla10g00587 Cla-Chr10:8581655 7.82E-140 proximal
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g400 Blo03g00604 . Bda07g00326 . . . . Bma13g00962 . . . . . . . . . . . . . . . . Cla10g00585 Cam10g0569 Cec10g0603 Cco10g0579 Clacu10g0605 Cmu10g1417 Cre10g0818 . . . . . Csa03g00574 . Cme06g02685 . . . . . . . . Sed06g0194 . . . Cma16g00826 . . . . Bhi11g00692 Tan01g1636 Cmetu06g2161 . . Mch10g1155 . . . . . . . . Lsi05g00660 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0013849 0 2 0 0 0 1 0 1 1 1 1 1 0 1 1 0 1 0 0 1 1 2 3 1 1 2 1 0 2 0 25
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla10g00585 Cla_Chr10 FPKM 0.0 0.0 1.113295 1.061241 0.0 0.0 0.0 0.0 0.768635 0.0