Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla10g00587 ATGTCTTTTCAAGTTCCCATCGTTTCTACTTCAAATATGACGGCCCAAAAAATCTCTGACATCAAACTTCGACCTACTGCCAATTATCATCCCAGTATTTGGAAGGATTATTTTCTTGTATCAAGTTGTGATGCATTGAAAATGGAGGACGACATGATAGAAGAAGTCCAACAGTTGAAAGAAGAAGTGAGGAAGATGCTAGTTGCTGTGGTTGAAAACCCTATAGATAAGCTAAAGTTGGTTGATTCAATCCAAAAGTTAGGTGTTTTTTACCATTTTGAAAAGGAGATTGATCAAGTTTTGGAAGAAATATATGTGGCGTTTAAGAGTTCATTGAATAATCAAAGTAGCGATGAAGATCTTAATACCGTTGCTCTTCTATTTCGTCTACTCAGACAACAAGGTTATAAAATTCCATGTGATATATTCTCAAAGTTTGTGGAAGACAATGGAAAATTCAAAGAAACATTAAGGAGTGATGCAAGAGGAATTTTGAGTTTATATGAAGCAACACACATGAGGGTTCATGGAGAAGAGCTGCTTGAAGAAGCACTTGATTTTTCAACCAAACATCTTAAACAAATTTTAGAAAACTCAAGCTCTCCTTTCACCACCGAAATTAGCAATGCTTTAAAATTGCCAATAAGAAGGGCTCTCCCAAGAGTAAAAGCAAGAGAGTATATTGAAATCTATCAACAAGATCCTTCACATAATGATGCATTGCTTGCCTTCTCAAAATTAGATTTCAACGTACTACAAAAGCTTCATCAAAGTGAGTTGAAGGAAATCACAAGGTGGTGGAAGGATTTGAACGTCCCAAAGAACTTTCCATTTGCGAGAGATCGAATTGTGGAGTGTTATTTTTGGATATTTGGTGTATATTTTGAACCTCAATTCAAGATTGGGAGGATAATATTTACCAAATTGCTTGGCGTGTTCTCAATTTTGGATGATATATATGATGCTTATGGAACAATTGAAGAACTCCAACTTTACACTTTAGCAATCAAAAGATGGGACATAAGCATGATTAATCAACTCCCGGAGTATATGAAAGTTCATTATATAACCCTGCTTGGTCTTTACGAAGAGATGGACAAAGAGATGGCGAAGGATGGAACATCATATCGTGCTCACTTTGCAAAGGAAGCAGTGATAAGCCTAGCCGAATCATATTTGAAAGAAGCTGAATGGCTGAACAAAAAGTACAGACCAAAATTTGAAGAATACATGGAATCAACTATTTCATTTGTTTGCATGGGAGACATTGCAACAAAAGAGGTATTTGATTGGCTTTCAGACAAACCCAAAATTCTTAAGGCTTCGTGCATCATTTGTAGACTCATGGACGATTTTGTCTCCTCCAAGTTTGAGCAAGAAAGAGAACATGTTCTTTCCGCGGCTGAATGTTACATGGACAATTATGGCTGCTCAGAAGGAGAAACACATGCTGAATTTCGAAAGCAATTAGAAGATGCATGGAAGAATATAAATGAAAGTTGCCTTCGTCCAATGACTGTTCCAATGCCATTTTTATTGCGTGTATTGAATCTTAGCAGAGTTATAGCCCTACTTTATTGTGATGAGGATGGATACACAAATTCCAAGGGTAGGACTAAACTTCTTATCCAGTCTATACTTGTTGACCCAGTGTGA 1656 36.65 MSFQVPIVSTSNMTAQKISDIKLRPTANYHPSIWKDYFLVSSCDALKMEDDMIEEVQQLKEEVRKMLVAVVENPIDKLKLVDSIQKLGVFYHFEKEIDQVLEEIYVAFKSSLNNQSSDEDLNTVALLFRLLRQQGYKIPCDIFSKFVEDNGKFKETLRSDARGILSLYEATHMRVHGEELLEEALDFSTKHLKQILENSSSPFTTEISNALKLPIRRALPRVKAREYIEIYQQDPSHNDALLAFSKLDFNVLQKLHQSELKEITRWWKDLNVPKNFPFARDRIVECYFWIFGVYFEPQFKIGRIIFTKLLGVFSILDDIYDAYGTIEELQLYTLAIKRWDISMINQLPEYMKVHYITLLGLYEEMDKEMAKDGTSYRAHFAKEAVISLAESYLKEAEWLNKKYRPKFEEYMESTISFVCMGDIATKEVFDWLSDKPKILKASCIICRLMDDFVSSKFEQEREHVLSAAECYMDNYGCSEGETHAEFRKQLEDAWKNINESCLRPMTVPMPFLLRVLNLSRVIALLYCDEDGYTNSKGRTKLLIQSILVDPV 551
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 8581655 8587838 + ClCG10G006230.1 Cla10g00587 282246

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla10g00587 551 CDD Terpene_cyclase_plant_C1 24 550 IPR044814 GO:0010333|GO:0016102
Cla10g00587 551 PANTHER TERPENE SYNTHASE 2-RELATED 20 533 - -
Cla10g00587 551 Gene3D Farnesyl Diphosphate Synthase 31 540 IPR008949 -
Cla10g00587 551 SFLD Isoprenoid Synthase Type I 237 550 - -
Cla10g00587 551 Coils Coil 49 69 - -
Cla10g00587 551 SFLD Terpene Cyclase Like 1 C Terminal Domain 237 550 IPR034741 -
Cla10g00587 551 Gene3D - 72 237 IPR036965 GO:0010333|GO:0016829
Cla10g00587 551 PANTHER OS04G0344100 PROTEIN-RELATED 20 533 - -
Cla10g00587 551 Pfam Terpene synthase, N-terminal domain 33 211 IPR001906 GO:0010333|GO:0016829
Cla10g00587 551 SUPERFAMILY Terpenoid synthases 237 551 IPR008949 -
Cla10g00587 551 SUPERFAMILY Terpenoid cyclases/Protein prenyltransferases 30 237 IPR008930 -
Cla10g00587 551 Pfam Terpene synthase family, metal binding domain 242 495 IPR005630 GO:0000287|GO:0010333|GO:0016829
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla10g00587 K15803 GERD; (-)-germacrene D synthase [EC:4.2.3.75] - csv:101211697 738.413
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla02g00087 Cla-Chr2:941245 Cla10g00587 Cla-Chr10:8581655 1.57E-112 dispersed
Cla10g00587 Cla-Chr10:8581655 Cla10g00589 Cla-Chr10:8683965 0 dispersed
Cla10g00585 Cla-Chr10:8526476 Cla10g00587 Cla-Chr10:8581655 7.82E-140 proximal
Cla10g00587 Cla-Chr10:8581655 Cla10g00588 Cla-Chr10:8655015 0 tandem
Cla10g00587 Cla-Chr10:8581655 Cla03g00489 Cla-Chr3:5404612 6.63E-53 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g399 Blo03g00605 . . . . . . . . . . . . . . . . . . . . . . . Cla10g00587 Cam10g0572 Cec10g0605 Cco10g0581 Clacu10g0606 Cmu10g1418 Cre10g0819 . . . . . . . . . . . . . . . . . . . . . . . . . Bhi11g00693 Tan01g1634 . . Hepe07g0540 Mch10g1151 . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000035 13 6 8 10 4 9 1 10 10 12 7 10 13 12 18 10 8 8 4 9 11 10 7 16 20 21 5 29 24 12 337
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla10g00587 Cla_Chr10 FPKM 3.885423 4.457516 18.5212 17.99032 5.683879 4.768534 5.239111 1.566049 1.760319 1.416698