Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla10g00588 ATGCAAGGAATAATGTCTTCTCAAGTTTCAAATTTTTCTGCGTCAGTTTTGAAGCCCAATGACATTCCTCATACTAAGCGTTCCATTGCAAATTTTCATCCAACTATTTGGAAGGACCATTTCCTTTCACTTACCTTTGACGATGCATTGAAGGTAGATGATGAAATGAAAGAAGGATCAGTTGAAAAGTTGAAAGAAGAAATAAGGATGATGGTGGTTGCTTCTGAGGGAAATCCAATGGAGAAGCTAAAGTTGGTTGATTCAATCCAACGGCTGGGTGTATCTTATCATTTTGAAAATGAGATTGACCAAGTTTTAGAACACATATATATGTCTTATTCCATTTTATTAACTAAAGATAGTGGTGAAGATCTTCATACTACTGCTCTTCTATTTCGACTTCTCAGGCAACAAGGTTATAAGATTTCATGCGATATATTCTCAAAGTTGATGGACAAGAATGGAAAATTTAAAGAATCATTGGGTGAGGATGAAAGAGGAATTTTGAGCCTATATGAAGCATCACATATGAGGGGACATGGAGAAGATGTGCTTGAGGAAGCTCTTGAATTTACTACCAAACATCTTAAAACATATATTGAGTACTCAAATAATCCTCATTTTGCAGCTGAAGTTAGGAATGCCTTGAAATTTCCTATTAGAAAAGGTGTTCCAAGAATCAAGACAAGACAGTATTTGGCAATATACCAACAACATCCTTCACACAATGAGACTTTGCTTAAATTCTCAAAACTAGACTTCAACATATTACAAAGACTTCACCAGAAAGAGTTAAGTGAAATCTGCAGGTGGTGGAAGGATTTGAACGTCCCAAAGAACTTTCCATTTGCGAGAGATAGAATTGTGGAGTGTTACTTTTGGACATTGGGTGTGTATTTTGAACCTCATTTCAAGATTGGGAGGAAAATAGTTACTAAAGTGATCGGAATGACCTCAATTTTGGATGATATATATGATGCTTATGGAACATTTGAAGAACTCCAAATTTTCACTCTAGCAATCAAAAGGTTACTTTCTTTAGCCTCTGTCTTGGTTCAAAATTATTTTGCAATTGTTTTTAGGTTTATGTTTCGAAAAGTTAGATGGGACATAAGCATGATTAATCTACTCCCGGAGTATATGAAAGTTTATTATATAGCTTTGCTTGATCTTTTCGAAGAGATTGATAAAGAGATAGTGAAGGATGGAACATCATATCGCGCTCACTTTGCAAAGGAAGCAATGAAAAGGCAAGCTGAATCCTATTTCAAAGAAGCTGAATGGCTAAACAAAAAATATAAACCAAAATTTGAAGAATACATGGAAGTGGCTTTAGTTAGCTCAGGTTATGCACTACTTGCAACTATTTCATTTGTTTGCATGGGTGACATTGCAACAAAGGAGGTATTTGATTGGCTTTCAGACTGTCCTAAAATTCTTCAAGCCTCAACCATCATTTCTAGACTCATGGACGATGTTGTCTCCTACAAGTTTGAAAAACAAAGGGAACATGTTGTTTCCGCGGTTGAATGTTACATGGACAATTGTGGCTACTCGAAGGAAGAAACATGTGCCGAACTGGAAAGGCAAGTAGAAGATGCATGGAAGAATATAAATGAATGTTGCCTTCATCCAACGACGGTTCCAATGCCATTTTTATTGTGTGTATTAAATCTTAGCAGAGTTATAGCCCTACTTTATTGTGATGAGGATGGATACACAAATACTAAGGGTAGGACTAAACTTCTTATCCAGTCTATACTTGTTGACCCAGTGTGA 1779 36.09 MQGIMSSQVSNFSASVLKPNDIPHTKRSIANFHPTIWKDHFLSLTFDDALKVDDEMKEGSVEKLKEEIRMMVVASEGNPMEKLKLVDSIQRLGVSYHFENEIDQVLEHIYMSYSILLTKDSGEDLHTTALLFRLLRQQGYKISCDIFSKLMDKNGKFKESLGEDERGILSLYEASHMRGHGEDVLEEALEFTTKHLKTYIEYSNNPHFAAEVRNALKFPIRKGVPRIKTRQYLAIYQQHPSHNETLLKFSKLDFNILQRLHQKELSEICRWWKDLNVPKNFPFARDRIVECYFWTLGVYFEPHFKIGRKIVTKVIGMTSILDDIYDAYGTFEELQIFTLAIKRLLSLASVLVQNYFAIVFRFMFRKVRWDISMINLLPEYMKVYYIALLDLFEEIDKEIVKDGTSYRAHFAKEAMKRQAESYFKEAEWLNKKYKPKFEEYMEVALVSSGYALLATISFVCMGDIATKEVFDWLSDCPKILQASTIISRLMDDVVSYKFEKQREHVVSAVECYMDNCGYSKEETCAELERQVEDAWKNINECCLHPTTVPMPFLLCVLNLSRVIALLYCDEDGYTNTKGRTKLLIQSILVDPV 592
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 8655015 8661619 + ClCG10G006250.2 Cla10g00588 282247

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla10g00588 592 PANTHER (-)-GERMACRENE D SYNTHASE-LIKE 24 361 - -
Cla10g00588 592 PANTHER (-)-GERMACRENE D SYNTHASE-LIKE 367 582 - -
Cla10g00588 592 PANTHER OS04G0344100 PROTEIN-RELATED 367 582 - -
Cla10g00588 592 Gene3D Farnesyl Diphosphate Synthase 368 581 IPR008949 -
Cla10g00588 592 CDD Terpene_cyclase_plant_C1 27 591 IPR044814 GO:0010333|GO:0016102
Cla10g00588 592 Gene3D - 77 242 IPR036965 GO:0010333|GO:0016829
Cla10g00588 592 PANTHER OS04G0344100 PROTEIN-RELATED 24 361 - -
Cla10g00588 592 Gene3D Farnesyl Diphosphate Synthase 34 364 IPR008949 -
Cla10g00588 592 SUPERFAMILY Terpenoid cyclases/Protein prenyltransferases 33 242 IPR008930 -
Cla10g00588 592 Pfam Terpene synthase family, metal binding domain 247 536 IPR005630 GO:0000287|GO:0010333|GO:0016829
Cla10g00588 592 Pfam Terpene synthase, N-terminal domain 36 216 IPR001906 GO:0010333|GO:0016829
Cla10g00588 592 SUPERFAMILY Terpenoid synthases 242 592 IPR008949 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla10g00588 K15803 GERD; (-)-germacrene D synthase [EC:4.2.3.75] K23172 csv:101211697 880.167
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla10g00346 Cla-Chr10:4577144 Cla10g00588 Cla-Chr10:8655015 6.07E-168 dispersed
Cla10g00347 Cla-Chr10:4605597 Cla10g00588 Cla-Chr10:8655015 7.71E-44 dispersed
Cla10g00585 Cla-Chr10:8526476 Cla10g00588 Cla-Chr10:8655015 2.63E-143 dispersed
Cla10g00587 Cla-Chr10:8581655 Cla10g00588 Cla-Chr10:8655015 0 tandem
Cla10g00588 Cla-Chr10:8655015 Cla10g00589 Cla-Chr10:8683965 0 tandem
Cla10g00588 Cla-Chr10:8655015 Cla03g00491 Cla-Chr3:5443351 6.36E-85 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g397 Blo03g00606 . . . . . . Bma13g00965 . . . . . . . . . . . . . . . . Cla10g00588 Cam10g0575 Cec10g0606 Cco10g0582 Clacu10g0607 Cmu10g1420 Cre10g0821 . . . . . Csa03g00576 . Cme06g02687 . . . . . . . . . . . . Cma16g00825 . . Cpe14g00717 . Bhi11g00694 Tan01g1630 . . Hepe07g1116 . . . . . . . . . Lsi05g00661 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000035 13 6 8 10 4 9 1 10 10 12 7 10 13 12 18 10 8 8 4 9 11 10 7 16 20 21 5 29 24 12 337
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla10g00588 Cla_Chr10 FPKM 0.0 0.0 0.0 0.0 0.064354 0.0 0.0 0.08107 0.0 0.0