Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla10g00589 ATGTCTTCTCAAGTTCCAAATTCTCCTGCTTCAATTATGAAGGCCAATGACATTCCTAATATTAAGCGTTCTATTGCAAATTTTCATCCTAGTATTTGGAATGATCATTTCCTTTCATTCTCCTTTGATGATGCATTGAAGGTAGATGATGAAATGAAAGAAGGATCAGTTGAAAAGTTGAAAGAAGAAATAAGGATGATGGTGGTTGCTTCTGAGGGAAATCCAATGGAGAAGCTAAAGTTGGTTGATTCAATCCAACGGCTGGGTGTATCTTATCATTTTGAAAATGAGATTGACCAAGTTTTAGAACACATATATATGTCTTATTCCATTTTATTAACTAAAGATAGTGGTGAAGATCTTCATACTACTGCTCTTCTATTTCGACTTCTCAGGCAACAAGGTTATAAGATTTCATGCGATATATTCTCAAAGTTGATGGACAAGAATGGAAAATTTAAAGAATCATTGGGTGAGGATGAAAGAGGAATTTTGAGCCTATATGAAGCATCACATATGAGGGGACATGGAGAAGATGTGCTTGAGGAAGCTCTTGAATTTACTACCAAACATCTTAAAACATATATTGAGTACTCAAATAATCCTCATTTTGCAGCTGAAGTTAGGAATGCCTTGAAATTTCCTATTAGAAAAGGTGTTCCAAGAATCAAGACAAGACAGTATTTGGCAATATACCAACAACATCCTTCACACAATGAGACTTTGCTTAAATTCTCAAAACTAGACTTCAACATATTACAAAGACTTCACCAGAAAGAGTTAAGTGAAATCTGCAGGTGGTGGAAGGATTTGAAAGTCCCAACAAAATTTCCTTTTGCAAGAGATAGAATTGTGGAGTGCTACTTTTGGACATTGGGATCATACTTCGAACCTCATTTAAGTGTTGGAAGGAAAATGTTAACCAAAGTAATCGCAATTTCTTCAATTTTAGATGATATATATGATGCCTATGGAACATTTGAAGAACTTCAAGTCCTCACTCCAGCAATTCAAAGGTTAGTTCAATTAATCCTAATGAATCAAGATCTTAATTTTAAAATGTTGCCTCATATACTAATAATTTTGTGGTTAAAGTTTTTCTTAAAGTGGGATAGAAGCATGGTGCATATACTCCCTGAGTACATGAAACCTTTTTATGTAGCAATGTTAGATCTTTATGAGGAAATTAGCAAAGAGATAGGCAAGGATGAAAGTTCACTCCACCTTCAAATTGCAATAGGAGGAATGAAAAAGCTAGCTGAATCCTACTTTAAAGAAGCTAAATGGTTAAACAAAAAGTATAAACCAAACTTTAAGGAGTACATGGACTTGGCATTAAGTACCACAGGTTATCCCATGCTTATAACTATTTCATTTCTCGGAATGGGTGACATTGTTACAAACGAGCAATATGGTTGTTCAGAGGAAGAAGCTTGTGTTGAACTTCATAAGCAAGTGGTTGATGCATGGAAGGACACAAATGAAGCATGTCTTCACCCAATCGCTGTTCCAATGCCTATTCTAATGCGTGTAGTGAATTTTTCAAGAGTTATGAACTTGCTTTATTTGGATGAAGATGGATACACAAATGCCAGGAGTGAAACAAAATCTCTTATCAAATCTCTTCTTGTACACCCAATGCCTTATTAA 1650 34.97 MSSQVPNSPASIMKANDIPNIKRSIANFHPSIWNDHFLSFSFDDALKVDDEMKEGSVEKLKEEIRMMVVASEGNPMEKLKLVDSIQRLGVSYHFENEIDQVLEHIYMSYSILLTKDSGEDLHTTALLFRLLRQQGYKISCDIFSKLMDKNGKFKESLGEDERGILSLYEASHMRGHGEDVLEEALEFTTKHLKTYIEYSNNPHFAAEVRNALKFPIRKGVPRIKTRQYLAIYQQHPSHNETLLKFSKLDFNILQRLHQKELSEICRWWKDLKVPTKFPFARDRIVECYFWTLGSYFEPHLSVGRKMLTKVIAISSILDDIYDAYGTFEELQVLTPAIQRLVQLILMNQDLNFKMLPHILIILWLKFFLKWDRSMVHILPEYMKPFYVAMLDLYEEISKEIGKDESSLHLQIAIGGMKKLAESYFKEAKWLNKKYKPNFKEYMDLALSTTGYPMLITISFLGMGDIVTNEQYGCSEEEACVELHKQVVDAWKDTNEACLHPIAVPMPILMRVVNFSRVMNLLYLDEDGYTNARSETKSLIKSLLVHPMPY 549
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 8683965 8697391 + ClCG10G006260.1 Cla10g00589 282248

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla10g00589 549 PANTHER OS04G0344100 PROTEIN-RELATED 470 537 - -
Cla10g00589 549 Pfam Terpene synthase, N-terminal domain 32 212 IPR001906 GO:0010333|GO:0016829
Cla10g00589 549 SUPERFAMILY Terpenoid synthases 238 548 IPR008949 -
Cla10g00589 549 PANTHER TERPENE SYNTHASE 2-RELATED 2 339 - -
Cla10g00589 549 Gene3D Farnesyl Diphosphate Synthase 30 339 IPR008949 -
Cla10g00589 549 CDD Terpene_cyclase_plant_C1 23 546 IPR044814 GO:0010333|GO:0016102
Cla10g00589 549 PANTHER OS04G0344100 PROTEIN-RELATED 369 469 - -
Cla10g00589 549 PANTHER OS04G0344100 PROTEIN-RELATED 2 339 - -
Cla10g00589 549 Pfam Terpene synthase family, metal binding domain 243 471 IPR005630 GO:0000287|GO:0010333|GO:0016829
Cla10g00589 549 Gene3D Farnesyl Diphosphate Synthase 470 547 IPR008949 -
Cla10g00589 549 SUPERFAMILY Terpenoid cyclases/Protein prenyltransferases 29 238 IPR008930 -
Cla10g00589 549 Gene3D - 73 238 IPR036965 GO:0010333|GO:0016829
Cla10g00589 549 Gene3D Farnesyl Diphosphate Synthase 367 469 IPR008949 -
Cla10g00589 549 PANTHER TERPENE SYNTHASE 2-RELATED 470 537 - -
Cla10g00589 549 PANTHER TERPENE SYNTHASE 2-RELATED 369 469 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla10g00589 K15803 GERD; (-)-germacrene D synthase [EC:4.2.3.75] K14183 csv:101211452 782.711
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla10g00587 Cla-Chr10:8581655 Cla10g00589 Cla-Chr10:8683965 0 dispersed
Cla10g00589 Cla-Chr10:8683965 Cla02g00083 Cla-Chr2:891137 3.42E-84 dispersed
Cla10g00588 Cla-Chr10:8655015 Cla10g00589 Cla-Chr10:8683965 0 tandem
Cla07g00032 Cla-Chr7:343709 Cla10g00589 Cla-Chr10:8683965 4.16E-23 transposed
Cla10g00589 Cla-Chr10:8683965 Cla03g00492 Cla-Chr3:5464037 8.61E-31 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g396 . . . . . . . . Cmo16g00930 . . . . . . . . . . . . . . . Cla10g00589 Cam10g0577 Cec10g0608 Cco10g0584 Clacu10g0608 Cmu10g1421 Cre10g0823 . . . . . Csa03g00578 . Cme06g02696 . . . . . . . . . . . . . . . . . Bhi11g00695 Tan01g1629 . . Hepe07g1115 . . . . . . . . . Lsi05g00662 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000035 13 6 8 10 4 9 1 10 10 12 7 10 13 12 18 10 8 8 4 9 11 10 7 16 20 21 5 29 24 12 337
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla10g00589 Cla_Chr10 FPKM 0.0 0.0 0.0 0.0 0.0 0.0 0.0 1.067263 0.64232 1.120719