Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla10g00596 ATGGACTCTTTCTTCTCAACACTCGTTGCCTTTAACTTAGTCTTTCTTCTCTTCAGGTCTCTTGCTGTCTCCGATTCCTTAACGGCTCAAAACCCGTATCTCAGAGATGGCCTTACTCTGGTCTCTAGAAATGGAATCTTCGAATTGGGTTTCTTCAGTTCTGGACTTCCCGCCAACCGTTACTTGGGAATCTGGTTCAAGAATCGGCGAGGTCCGACCTCTGTTTGGGTTGCGAACAGGAAAACCCCCATTAATGATTCGTCTGGTGTACTGGTGATGAACATTACAACAGGAAACCTTACACTCTACAGCCATAATTCCACTGCCATTGTTTGGTCTGCCAGGTTACTGAGAAAAGTCCCCAACGGGGTACTCCAACTATTGGACACTGGAAATCTTGTGCTGAGGAATAGGGAAGATGAAGATCCGCGAAACTATTCCTGGCAAAGCTTTGATTACCCTACTGACACTCTCTTGCCTGGAATGAAGCTAGGTTGGGACTTGAGAAATAACATAGAAAGAAGATTAGAGGCTTGGAAGAATCTCAATGATCCATCTCCTGGAGACCTCAGTTGGAGGATGGAGCTTCATCAATATCCCGAGACTGTCATGTGGAATGGTTCCAAAAAGTACGTCAGGCATGGCCCATGGAATGGTGTGAGACTCAGTAGTAGACCACTAGCTGCAGCGCCAATTTTGAACTTCAACTTTGTTTCAAATGAGGATGAGGTTTACTACCAATACTCTGTTGTAAATAAGTCTCATTCAGTGATGTTGGTGATGAACCAATCCAATTATGTGCGCATATTGTACTTGTGGTCTGCAGCTGAAAGACGATGGAGAGTTTACACTTCATTACCAAGAGATAACTGTGACAATTATGCCCTGTGTGGCCCCTATGGATATTGTGATATAAGAGTCACCCCATCTTGTTTATGTCTAGAAGGGTTCAAGCCAAGATCACCTGATAGTTGGGAGGCCGGGGAATTTGCAGACGGTTGTGAACGAAACAAACTGATGAACTGTGGTGATGAAGTTGGGTTTGCACAGCTCAACCAGTTGAAATTGCCAGACACTAAGTATACTTGGGTCAACAAAAGCATGAATCTTGAGGAGTGCAAGCAAAAATGCTTGAGAAATTGTTCGTGTATGGCTTATGCAGTGACAAATGTCAGTGGCAGTGGCAGTGGCTGTGCCTTGTGGATTGGTGATCTAATTGACTTGAAACTGATCCCGGACGCAGGACAGGATTTATATGTCAAAATGCTGGCATCAGAATTAGTCAAGCATGGGGAGGCACACAAAACTGAAAGATTGAATCCTAAGGTGAAGATTGCTTTGTTTGTGATTTCCGGTTTAGGTTTGGCTATCCTCTTCATAGGCATAGGCGTATACATTTTCAAGAAGCGATCAACCTTCAAAGATGAACAAGAGAAAATAGAAGATCAAGACCTAGAGCTTCCCTTGTTTGATCTATCCTTGATTAATAGTGCCACAGATAACTTCTCACATAATAATAAGCTAGGAGAAGGTGGCTTTGGGCCAGTATATAAGGCATGGCGATTGTGGAAAGAAGGAAATATAGAAGAATTGATCGACGATGCCATTCGAGAAACATGCAGCCTTTCGGAGGTACTGAGATGTATCAATATCAGTTTGTTGTGTGTTCAACAACATCCAAATGATCGACCCACAATGTCATTGGTGGTTATGATGTTAGGTTGTGAAATTCCTTTGTCGCAACCGAAACAACCCGGATTTTTCATAGAAAATGAAAAAGCCATTGCAATGAAAAGAGGCTCAAGTAAAGATAAATCAACTTCAACTAATGAATTGACTATTACGCTCCCAGATCCGAGAGATGGCTTTAGTCTGGTCTCCAAAAATGGAAATTTCGAATTGGGTTTCTTCAGTCCTGGTCTTTCGAGAGACCGTTACTTGGGAATTTGGTTCAAGAATCGGCGAGGTCCGACCTCTGTTTGGGTTGCGAATAGGAAAACGCCAATTAATGACTCATCTGGTGTACTGATGATGAACCTTACACCAGGAAATCTTATACTCTATAGCCATAATTCCACCGCCACCATTGTTTGGTCCGCCAGGTTGCTGAGAAAAGTCCCCAATGGGGTACTCCAATTATTGGACACTGGAAATCTTGTGCTGAGAGATAGGGAAGATGAAAATCCCCAAAACTACTCGTGGCAAAGTTTTGATTACCCTACTGACACTCTTTTGCCTGGAATGAAGCTGGGTTGGGACTTGAGAAATAACATAAATAGAAGATTAGATGCTTGGAAAAATCCCAATGACCCATCTCCTGGAAACCTCAGTTGGAGGATGGAGCTTCATGAATATCCTGAGTCTGTCATGTGGAAAGGTTCCCAAGAATACTTCAGGCATGGCCCATGGAATGGTATGAGAGTCACTAGTAGACCACTGGGTATTGCACCAATTCTGAACTTCAACTTTGTTTCAAATGAAGATGAAGTTTACTACCAATACTCTGTTGTTAATAAGTCTCATACAGTGATGGTGGTGATGAACCAATCCAATTACCTGCGCATAATGTACTTATGGTCTGCAGCTGAGAGACAGTGGAGACTTTACACTTCATTGCCAAGAGATTTCTGTGACAATTATGCCCTGTGTGGCCCTTATGGGTATTGTGATATAAGGGTAACTCCATCTTGTAAATGTCTAGAAGGGTTTAAGCCAAGATCACCTGATAGTTGGACGGCAGGGGAATTTGCGGATGGTTGTGAACGAAACAAACTGATGAACTGTGGTGATGAAGTTGGGTTTGCACAGCTCAACCAGCTGAAATTGCCAGACACAAAGCATACTTGGGTAAACAAAAGCATGAATCTTGAGGAGTGCAGGCAAAAATGCTTGAGAAATTGCTCTTGTATGGCTTATGCAAATACAAATATCAGTGGGAGTGGCAGTGGCTGTGCCTTGTGGATTGGTGATCTAATTGACTTGAAATTGATCCCGGACGCAGGACAAGATTTATATGTCAAAATGCTTGTATCAGAATTAGTCAAGCGTAGGGAGGCACACAAAACTGAAAGATTGAATCCTAAGGTGAAGATATCTTTGGTTGTGATTGTTGCCAGTTTCAGTTTGGCTATCCTCTTCATATGCTTATACACTTTCAAAAAGAGATCAACCGTCAAAGATGACCATGAGAAAATAGAAGCTCAAGATCTGGAGCTTCCCTTATTTGATCTATCCTTGATAAATAGTGCCACAAATAACTTCTCGATTGATAATAACGGATATATGGCACCTGAATATGCTTTTGATGGACGATTCTCAGTAAAATCTGATGCTTTTAGTTATGGCATTTTGTTGTTGGAGATCATTAGTGGAAAAAGAAGCAGAAGTTTCTGCCACTTGAATGACCAAAATCTCATTGCATATGCCTGGCGATTGTGGAAAGAAGGAAATCCAGAGGAATTGATTGACAACGCCATTCGAGAAACATGCATTATTTCGGAGGTATTGAGATGTATCAATATCAGTTTGTTGTGTGTCCAACAACATCCTAACGATCGACCCACAATGTCATCGGTGGTTATGATGTTAGGCTGTGAAATTCCTTTGTCGCAACCAAAACAACCCGGATTTTTCGTAGAAAATGAAGCCATTGCAATGAAGAGTGGCTCAAGTAAAGACAAATCAACTTCAACTAATGAATTAACTATTACACTCCCAGATCCAAGGTAA 3729 42.0 MDSFFSTLVAFNLVFLLFRSLAVSDSLTAQNPYLRDGLTLVSRNGIFELGFFSSGLPANRYLGIWFKNRRGPTSVWVANRKTPINDSSGVLVMNITTGNLTLYSHNSTAIVWSARLLRKVPNGVLQLLDTGNLVLRNREDEDPRNYSWQSFDYPTDTLLPGMKLGWDLRNNIERRLEAWKNLNDPSPGDLSWRMELHQYPETVMWNGSKKYVRHGPWNGVRLSSRPLAAAPILNFNFVSNEDEVYYQYSVVNKSHSVMLVMNQSNYVRILYLWSAAERRWRVYTSLPRDNCDNYALCGPYGYCDIRVTPSCLCLEGFKPRSPDSWEAGEFADGCERNKLMNCGDEVGFAQLNQLKLPDTKYTWVNKSMNLEECKQKCLRNCSCMAYAVTNVSGSGSGCALWIGDLIDLKLIPDAGQDLYVKMLASELVKHGEAHKTERLNPKVKIALFVISGLGLAILFIGIGVYIFKKRSTFKDEQEKIEDQDLELPLFDLSLINSATDNFSHNNKLGEGGFGPVYKAWRLWKEGNIEELIDDAIRETCSLSEVLRCINISLLCVQQHPNDRPTMSLVVMMLGCEIPLSQPKQPGFFIENEKAIAMKRGSSKDKSTSTNELTITLPDPRDGFSLVSKNGNFELGFFSPGLSRDRYLGIWFKNRRGPTSVWVANRKTPINDSSGVLMMNLTPGNLILYSHNSTATIVWSARLLRKVPNGVLQLLDTGNLVLRDREDENPQNYSWQSFDYPTDTLLPGMKLGWDLRNNINRRLDAWKNPNDPSPGNLSWRMELHEYPESVMWKGSQEYFRHGPWNGMRVTSRPLGIAPILNFNFVSNEDEVYYQYSVVNKSHTVMVVMNQSNYLRIMYLWSAAERQWRLYTSLPRDFCDNYALCGPYGYCDIRVTPSCKCLEGFKPRSPDSWTAGEFADGCERNKLMNCGDEVGFAQLNQLKLPDTKHTWVNKSMNLEECRQKCLRNCSCMAYANTNISGSGSGCALWIGDLIDLKLIPDAGQDLYVKMLVSELVKRREAHKTERLNPKVKISLVVIVASFSLAILFICLYTFKKRSTVKDDHEKIEAQDLELPLFDLSLINSATNNFSIDNNGYMAPEYAFDGRFSVKSDAFSYGILLLEIISGKRSRSFCHLNDQNLIAYAWRLWKEGNPEELIDNAIRETCIISEVLRCINISLLCVQQHPNDRPTMSSVVMMLGCEIPLSQPKQPGFFVENEAIAMKSGSSKDKSTSTNELTITLPDPR 1242
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 8789884 8805731 - ClCG10G006320.1 Cla10g00596 282255

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla10g00596 1242 SUPERFAMILY alpha-D-mannose-specific plant lectins 74 185 IPR036426 -
Cla10g00596 1242 Pfam Protein tyrosine and serine/threonine kinase 1093 1195 IPR001245 GO:0004672|GO:0006468
Cla10g00596 1242 Gene3D Hepatocyte Growth Factor 340 418 - -
Cla10g00596 1242 Pfam S-locus glycoprotein domain 213 320 IPR000858 GO:0048544
Cla10g00596 1242 Pfam S-locus glycoprotein domain 798 906 IPR000858 GO:0048544
Cla10g00596 1242 Pfam PAN-like domain 929 994 IPR003609 -
Cla10g00596 1242 Pfam PAN-like domain 343 408 IPR003609 -
Cla10g00596 1242 MobiDBLite consensus disorder prediction 1221 1242 - -
Cla10g00596 1242 CDD B_lectin 33 154 IPR001480 -
Cla10g00596 1242 CDD B_lectin 621 740 IPR001480 -
Cla10g00596 1242 CDD PAN_AP_plant 340 421 - -
Cla10g00596 1242 SMART blect_4 31 154 IPR001480 -
Cla10g00596 1242 SMART blect_4 616 740 IPR001480 -
Cla10g00596 1242 ProSiteProfiles PAN/Apple domain profile. 928 1009 IPR003609 -
Cla10g00596 1242 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 620 1091 - -
Cla10g00596 1242 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 1093 1239 - -
Cla10g00596 1242 SUPERFAMILY Protein kinase-like (PK-like) 1092 1204 IPR011009 -
Cla10g00596 1242 SUPERFAMILY Protein kinase-like (PK-like) 488 551 IPR011009 -
Cla10g00596 1242 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 518 617 - -
Cla10g00596 1242 ProSiteProfiles Bulb-type lectin domain profile. 610 734 IPR001480 -
Cla10g00596 1242 PANTHER - 518 617 - -
Cla10g00596 1242 Gene3D Phosphorylase Kinase; domain 1 481 575 - -
Cla10g00596 1242 PANTHER - 620 1091 - -
Cla10g00596 1242 PANTHER - 1093 1239 - -
Cla10g00596 1242 PANTHER - 24 518 - -
Cla10g00596 1242 SMART ntp_6 929 1008 IPR003609 -
Cla10g00596 1242 SMART ntp_6 343 422 IPR003609 -
Cla10g00596 1242 Pfam D-mannose binding lectin 658 766 IPR001480 -
Cla10g00596 1242 Pfam D-mannose binding lectin 73 180 IPR001480 -
Cla10g00596 1242 Gene3D Transferase(Phosphotransferase) domain 1 1039 1203 - -
Cla10g00596 1242 Gene3D - 20 151 IPR036426 -
Cla10g00596 1242 Gene3D - 618 737 IPR036426 -
Cla10g00596 1242 SUPERFAMILY alpha-D-mannose-specific plant lectins 659 771 IPR036426 -
Cla10g00596 1242 ProSiteProfiles Bulb-type lectin domain profile. 25 148 IPR001480 -
Cla10g00596 1242 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 24 518 - -
Cla10g00596 1242 CDD PAN_AP_plant 926 1007 - -
Cla10g00596 1242 ProSiteProfiles PAN/Apple domain profile. 342 423 IPR003609 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla10g00596 - - - csv:101210952 934.865
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla03g00499 Cla-Chr3:5558184 Cla10g00596 Cla-Chr10:8789884 6.20E-21 dispersed
Cla03g00508 Cla-Chr3:5618670 Cla10g00596 Cla-Chr10:8789884 2.48E-86 dispersed
Cla05g01568 Cla-Chr5:26537136 Cla10g00596 Cla-Chr10:8789884 3.77E-27 dispersed
Cla10g00596 Cla-Chr10:8789884 Cla03g00498 Cla-Chr3:5550542 4.71E-17 dispersed
Cla04g01088 Cla-Chr4:26057763 Cla10g00596 Cla-Chr10:8789884 6.27E-08 transposed
Cla10g00596 Cla-Chr10:8789884 Cla03g00505 Cla-Chr3:5585575 2.31E-12 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g348 . . . . . . . . . . . . . . . . . . . . . . . . Cla10g00596 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000044 0 24 5 3 2 9 7 8 11 14 6 9 9 16 11 9 8 16 6 8 18 10 10 8 9 16 4 9 10 13 288
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
80846 PF07714 PK_Tyr_Ser-Thr 1.90E-08 CL0016 Cla PK
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla10g00596 Cla_Chr10 FPKM 2.466393 2.296137 2.422502 2.334572 8.589034 8.431892 8.441237 2.093471 1.752746 2.377494