Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla10g00605 ATGGCCACCACCTCCGACACATCCGACCATGAACAATTAGAAGAAGAAGAATCAGAAGAAGAGCCGTCCAACGGTGGGTTCTGCCGGAGCCTATACGGAGTCGGCTCAGTTCTTGACCCGACAACCAAATGGGTCCGAGAATGGAACCGTGTCTTCCTCCTCGTCTGCGCGGCGGGGCTGTTCGTCGACCCTCTCTTTCTCTACACGCTATCGATAAGCGAGTCTTGGACGTGCGTCTTTATCGATGGATGGTTGGCCATCACCGTCACCGTCCTCCGCTGCATGGCCGACGCTTTGCACCTTTGGAACATCTGGCTCCAGCTCAAGACTGCCACAAGGTCCTCCTTTTCCGGTAGCAGCGGCGGTGATGTGACGGCCGAAAATAGAGGCCTTAGAGATACCACTCCACGCGCCGTCGCTCTCCGGTATTTCAAGTCCAAGAAAGGCTTCTTCTTTGATCTCTTTGTTATTCTTCCCATTCCTCAGGTTGTATTATGGGTTGTAATTCCTAGAATAATGAAAGAAGGAAGAGTGACATTGGTGATGACAGTATTATTAATAGTATTTTTGTTTCAATATTTGCCAAAATTATACCATTCCGTTTGCTTGTTGCGGCGCCTCCAAAACCTATCTGGCTACATATTCGGCACTGTTTGGTGGGGCATTGCTCTCAATCTCATTGCTTACTTTGTTGCTGCCCATGCTGCAGGAGCATGTTGGTATCTATTGGGGGTACAAAGAGCAGCAAAATGCTTAAAAGAGCAATGCGGAGCAAGAAGCAACAGCTGTGGAGTTAGATTGCTATCATGCAAAGACCCAATTTTCTATGGAGCAAATAATATGGGAATAGGGAGAGACAGAGGGAGATTTGATTGGGCAAACAACAGGCAAATAAAGTTAATGTGTTTGGATACTTCTGATAACTATGATTATGGAGCTTACAAATGGACTGTTCAGCTTGTTATCAATCAAAGTCGCTTGGAGAAGATCCTTTTTCCCATCTTTTGGGGCCTCATGACTCTTAGTACCTTTGGGAACTTGGAAAGCACCACTGAATGGCTGGAAGTAGTGTTCAATATCATTGTTCTCACCAGTGGACTCCTATTGGTCACCATGTTGATTGGAAATATCAAGGTGTTTCTGCATGCAACAACGTCAAAGAAGCAAGCAATGCAGCTGAAGATGAGGAACCTAGAGTGGTGGATGAGGAAGCGACGGCTGCCACAAGGATTCCGGCAGCGTGTGCGAAACTACGAGCGGCAGCGGTGGGCAGCGATGCGAGGTGTGGACGAGTGCGAGATGATAAAAAACCTGCCGGAAGGGCTGCGGCGAGACATAAAGTATCACCTTTGCTTGGATTTGGTTAGGCAGGTGCCATTGTTTCAACATATGGATGATCTTGTTCTTGAGAACATTTGTGATCGTGTCAAGTCCCTCATCTTCACCAAGGGCGAAACTATAACAAGAGAAGGAGATCCAGTACAAAGAATGCTATTCGTTGTGAGAGGGCATCTCCAAAGCAGCCAAGTGTTACGCGACGGCGTACAAAGTTGTTGCATGTTAGGCCCAGGCAACTTCAGTGGCGACGAGCTTCTATCCTGGTGCCTCCGCCGCCCCTTCATTGAGCGCCTTCCCCCCTCCTCCTGCACTCTTGTCACACTCGAGACCACCGAGGCCTTCGGCTTGGAGGCTGACGACGTCAAGTACGTAACCCAGCACTTCCGCTACACTTTCGTCAACGACAAGGTCAAGCGCAGCGCCCGCTACTACTCCCCCGGCTGGCGCACTTGGGCAGCCGTCGCCATCCAGCTCGCCTGGCGCCGTTATCGCCACCGTCTCACACTCACGTCTTTGTCCTTTATTCGGCCCCGCCGCCCACTCTCACGCTGCTCTTCCTTAGGGGAGGATCGCCTCCGCCTCTATACGGCATTGCTTACTTCTCCTAAGCCCAATCAGGACCATTTTGATTTTTGA 1974 50.05 MATTSDTSDHEQLEEEESEEEPSNGGFCRSLYGVGSVLDPTTKWVREWNRVFLLVCAAGLFVDPLFLYTLSISESWTCVFIDGWLAITVTVLRCMADALHLWNIWLQLKTATRSSFSGSSGGDVTAENRGLRDTTPRAVALRYFKSKKGFFFDLFVILPIPQVVLWVVIPRIMKEGRVTLVMTVLLIVFLFQYLPKLYHSVCLLRRLQNLSGYIFGTVWWGIALNLIAYFVAAHAAGACWYLLGVQRAAKCLKEQCGARSNSCGVRLLSCKDPIFYGANNMGIGRDRGRFDWANNRQIKLMCLDTSDNYDYGAYKWTVQLVINQSRLEKILFPIFWGLMTLSTFGNLESTTEWLEVVFNIIVLTSGLLLVTMLIGNIKVFLHATTSKKQAMQLKMRNLEWWMRKRRLPQGFRQRVRNYERQRWAAMRGVDECEMIKNLPEGLRRDIKYHLCLDLVRQVPLFQHMDDLVLENICDRVKSLIFTKGETITREGDPVQRMLFVVRGHLQSSQVLRDGVQSCCMLGPGNFSGDELLSWCLRRPFIERLPPSSCTLVTLETTEAFGLEADDVKYVTQHFRYTFVNDKVKRSARYYSPGWRTWAAVAIQLAWRRYRHRLTLTSLSFIRPRRPLSRCSSLGEDRLRLYTALLTSPKPNQDHFDF 657
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 9002173 9008720 - ClCG10G006450.1 Cla10g00605 282264
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla10g00605 657 Pfam Ion transport protein 48 377 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Cla10g00605 657 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL-LIKE PROTEIN 6 654 - -
Cla10g00605 657 SMART cnmp_10 460 589 IPR000595 -
Cla10g00605 657 SUPERFAMILY cAMP-binding domain-like 386 574 IPR018490 -
Cla10g00605 657 MobiDBLite consensus disorder prediction 1 26 - -
Cla10g00605 657 Gene3D Helix hairpin bin 385 451 - -
Cla10g00605 657 Gene3D Jelly Rolls 458 576 IPR014710 -
Cla10g00605 657 CDD CAP_ED 460 566 IPR000595 -
Cla10g00605 657 ProSiteProfiles cAMP/cGMP binding motif profile. 460 539 IPR000595 -
Cla10g00605 657 SUPERFAMILY Voltage-gated potassium channels 40 381 - -
Cla10g00605 657 Pfam Cyclic nucleotide-binding domain 481 568 IPR000595 -
Cla10g00605 657 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 6 654 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla10g00605 Cla-Chr10:9002173 Cla11g00434 Cla-Chr11:5006657 0 dispersed
Cla10g00605 Cla-Chr10:9002173 Cla10g01367 Cla-Chr10:28734213 8.24E-121 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla10g00605 K05391 - csv:101207531 1220.68