Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla10g00612 ATGGATGACGTCGTCGGAAACAACCGTATTCGTAATCTAAAAGACGGCTTTCACCACCGTGACCTGCGGACGAAGATCATCCAATTTCTCACCGGCGTTGGCAAGTTCGCTGTTGACTCTACTATCTTCAGCTCTCTCAAGCCCATCTCCGGTAAGAATCAGGCACATAAGATTGGGCAGGGAGGAATAAAGGAAACGCCCCATTCATCCTCTTTAAATGAAAAGAAGCCAGAAGAGCTTAAACTAGTGATGGATAAGATGCAGGCAGAGATAGAGGAAACAGAGGGGCACAAGAATAAAATGAAGCAGCACCATTGTACATCTGCAGAGGTTGTTGATGACTCTGAACCACTAAAGAAGTTGCCAGGGGAAGGTGCCAAAGGATCAGCCAATGTAACCGAAAACAGGAAAAGGATCTTCATCCGATCCCGACTAATAGCAAGAATAATGGATTCCTTTCTTGACAAGGCTTCTGTTAAGCTCCACGAGGTTCTCTTCTCGTCACAATTTCCAAAAGCAGAGCACCGAACCATGGCGGCATGGACGACGGCAGCTCGCCGCATAGTTCCGTCTCACAAGCCAGTTTCTACGGCTCAAATCGCCTCTCTAACTCATCGGCGCGGTTTCGCCGCCGGTGGCGATCATCATGGACCTTCGAAGGTGAACTTTTGGGAGGATCCATTTAATCCATCCAGATGGAAAGGAGAACATTTTGTGATTGTGTCTTTGACTGGATGGGGTTTAGTTCTTTATGGGGCCTACGAGTTCTTCACTAAAGGCAGGAAGGAAGAGAAAGTTGGAGATGGAAAACACTAG 816 47.43 MDDVVGNNRIRNLKDGFHHRDLRTKIIQFLTGVGKFAVDSTIFSSLKPISGKNQAHKIGQGGIKETPHSSSLNEKKPEELKLVMDKMQAEIEETEGHKNKMKQHHCTSAEVVDDSEPLKKLPGEGAKGSANVTENRKRIFIRSRLIARIMDSFLDKASVKLHEVLFSSQFPKAEHRTMAAWTTAARRIVPSHKPVSTAQIASLTHRRGFAAGGDHHGPSKVNFWEDPFNPSRWKGEHFVIVSLTGWGLVLYGAYEFFTKGRKEEKVGDGKH 271
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 9103228 9109351 + ClCG10G006550.2 Cla10g00612 282271

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla10g00612 271 Coils Coil 84 104 - -
Cla10g00612 271 MobiDBLite consensus disorder prediction 109 129 - -
Cla10g00612 271 PANTHER - 119 265 - -
Cla10g00612 271 MobiDBLite consensus disorder prediction 53 73 - -
Cla10g00612 271 PANTHER EXPRESSED PROTEIN 119 265 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla10g00612 - - - cmo:103493357 235.728
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla02g01701 Cla-Chr2:31871754 Cla10g00612 Cla-Chr10:9103228 6.78E-29 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g287 . . . . . . . . . . . . . . . . . . . . . . . . Cla10g00612 Cam10g0606 Cec10g0635 Cco10g0610 Clacu10g0637 Cmu10g1456 Cre10g0848 . . . . . Csa03g00601 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Chy06g01722 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0013115 1 1 0 1 0 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 1 1 1 1 1 1 1 1 1 0 26
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla10g00612 Cla_Chr10 FPKM 19.951385 23.712759 12.800893 12.122355 18.677172 17.560278 17.284491 11.515818 11.127264 10.612984