Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla10g00639 ATGGATCGGGTGCTAAAGGCCGCAAGAGCATCCGGTTCTCTTAATCTTTCCAATCGCTCTCTCAGGCAAGTCTATCGGAGCTTGGATGCAGTTCAGGCAGACGAGAAGTGGTGGGAGGCTGTGGAGCTACAGAAGCTAATTCTAGCTCATAATAATATTCAATTGTTGAGTGAAGAACTGAGGAATTTGTCTTCTCTTACTGTATTAAATGTTAGTTACAACAAACTTTTTGAACTACCAGCTGCAATTGGAGAGCTTCCTGCCCTAAAGCTCTTAGATGTGTCCTTCAATTCGTTAATGAGAATACCTGAGGAAATTGGATCCGCCATTTCACTTGTCAAATTTGACTGTTCAAGCAATCACCTTAAGGAACTACCAGGTGGACTTGGAAGGTGTTCAGATCTGTCAGATCTGAAGGCATCAAACAACTCCATTTCCAGCTTGCCCGATGAACTTGCAAACTGCTCAAAATTGACAAAGCTTGATATGGAGGGGAACAAGCTAATGGTGATTTCCAAAAATTTGATTGCATCATGGACTATGCTCACTGAACTTAATGCATCAAAGAATTTGCTTAATGAATTGCCTGAGAATATTGGTAGCCTATCACGCCTCATTCGTTTAAATATATTCCAAAACAAAATTTCATCAATTCCAGCTTCAATAAAGGATTGCTGTGCGCTTGCAGAGTTATATATGGGGAATAATTCAGTGAGTACGCTACCAGTGGAGATTGGGGCACTTTCTCATTTAGGGACTTTAGATCTTCACTCAAACCAGGCTAAACCTGGGATAAAAGAAATTCATGTGGGATATACCACCAGAAGAATCAAAGAAAACTATCCAAGGGGAGTACACAAAGGTCTAAGCATGAAGGTAAAAGGTTCCAGCACTGGAGGTTTACTAATCAATGAACCCCCAAAACCTAATGGCAGAAGGGAGACAAATACCTATGAAGAAGTGAAAGAGAAGATTGCGGCACATGGTGGAGGTGAAAACATAGTGAAGAGGTTGAAAGAGTATCCAGTTGAGGCATGCAGGTTGCATCTCTTGCTCCTAGATCTTTCAAACAATTCATTGAGTGGACTGCCCTCAGAAATCGGTAAGATGACTACTTTGAGAAAGCTCTTGCTCACAGGCAATCCCATACGTACTCTTCGAAGCTCACTAGTTTCTGGGCCAACACCTGCTTTACTGAAGTTTCTCCGAAGTAGACTTCCTGAAAATGAAGAGCCTGAAGCTAGTAGCACTCAAAGAGGGGATGTAATATCTATGGCAGCTAGAATGTCTATCACTTCAAAGGAGCTTTCTCTAGAAGGGCAAGGGCTGAGTGCTGTGCCATCAGAAGTTTGGGAATCCAGTGAACTCATGAAACTTGATCTGTCAAAGAATTCCCTCCAGGAGCTACCAGTTGAACTTTCCTCATGTACTTCACTACAGACCTTGATTTTGTCTAGGAACAAGATTAAAGATTGGCCAGGTGCAATTCTCAAGTCGCTACCTAATCTCATGTGTTTAAAGCTGGACAATAATCCACTTAAACAGATTCCGTCAGATGGGTTTCAAGCAGTCTCCATGCTACAGGTTTTAGATCTTAGTGGCAATATAGCTTCCTTGCCAGAGCACCCAACATTTTCTGGCTTACCACTTCTGCAAGAGCTTTACCTAAGGCTAGTTCACAAGAAACTGGGATATTTTCCAGCCCTCCAAGATTCCTGTCATACTTACTTGTGCCGTGTTCTTATGCACCTGCGGATACTTGATTTGAGTCAAAATTCAATTCAATTAGTTCCAGAGGTAAACAGTGTAGTTGCAATCCAAGAGGCCTTAACGGGATCTTTTCAAGTTCATAAGCTTAAACATATATTATATTTTCCCCTGCACCTTTCACTAGTTCAATCCTCTATTCTGGTTCTCCGATTCATCTTTGGCTTGGTGCAGGGATTGAAGAATCTTGCTGCCCTTACTGAGCTGGACCTATCAGACAATAACATTTCGATGCTCCCTCCACAGCTGAGCTTACTTGAGCCCAGACTACAGGTACTGAGACTGGATGGAAATCCACTAAGAAGTGGTCACATTTCATTATATAGCATTAGGAGGGCAATCTTGGACAAAGGAACCAAAGCTGTTTTAACATATTTGAAGGATAAATTGACTGATTGA 2166 41.87 MDRVLKAARASGSLNLSNRSLRQVYRSLDAVQADEKWWEAVELQKLILAHNNIQLLSEELRNLSSLTVLNVSYNKLFELPAAIGELPALKLLDVSFNSLMRIPEEIGSAISLVKFDCSSNHLKELPGGLGRCSDLSDLKASNNSISSLPDELANCSKLTKLDMEGNKLMVISKNLIASWTMLTELNASKNLLNELPENIGSLSRLIRLNIFQNKISSIPASIKDCCALAELYMGNNSVSTLPVEIGALSHLGTLDLHSNQAKPGIKEIHVGYTTRRIKENYPRGVHKGLSMKVKGSSTGGLLINEPPKPNGRRETNTYEEVKEKIAAHGGGENIVKRLKEYPVEACRLHLLLLDLSNNSLSGLPSEIGKMTTLRKLLLTGNPIRTLRSSLVSGPTPALLKFLRSRLPENEEPEASSTQRGDVISMAARMSITSKELSLEGQGLSAVPSEVWESSELMKLDLSKNSLQELPVELSSCTSLQTLILSRNKIKDWPGAILKSLPNLMCLKLDNNPLKQIPSDGFQAVSMLQVLDLSGNIASLPEHPTFSGLPLLQELYLRLVHKKLGYFPALQDSCHTYLCRVLMHLRILDLSQNSIQLVPEVNSVVAIQEALTGSFQVHKLKHILYFPLHLSLVQSSILVLRFIFGLVQGLKNLAALTELDLSDNNISMLPPQLSLLEPRLQVLRLDGNPLRSGHISLYSIRRAILDKGTKAVLTYLKDKLTD 721
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 9705244 9726750 - ClCG10G006832.1 Cla10g00639 282298

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla10g00639 721 Coils Coil 716 721 - -
Cla10g00639 721 PANTHER LRR RECEPTOR-LIKE KINASE 132 260 - -
Cla10g00639 721 SMART LRR_bac_2 63 82 - -
Cla10g00639 721 SMART LRR_bac_2 86 105 - -
Cla10g00639 721 SMART LRR_bac_2 202 221 - -
Cla10g00639 721 SMART LRR_bac_2 652 671 - -
Cla10g00639 721 SMART LRR_bac_2 132 151 - -
Cla10g00639 721 SMART LRR_bac_2 182 198 - -
Cla10g00639 721 SMART LRR_bac_2 347 366 - -
Cla10g00639 721 SMART LRR_bac_2 453 472 - -
Cla10g00639 721 PANTHER LEUCINE RICH REPEAT CONTAINING PROTEIN 337 720 - -
Cla10g00639 721 SUPERFAMILY L domain-like 178 690 - -
Cla10g00639 721 ProSiteProfiles Leucine-rich repeat profile. 654 675 IPR001611 GO:0005515
Cla10g00639 721 SUPERFAMILY L domain-like 37 260 - -
Cla10g00639 721 Pfam Leucine rich repeat 434 489 IPR001611 GO:0005515
Cla10g00639 721 Pfam Leucine rich repeat 42 99 IPR001611 GO:0005515
Cla10g00639 721 Pfam Leucine rich repeat 501 556 IPR001611 GO:0005515
Cla10g00639 721 Gene3D Ribonuclease Inhibitor 337 404 IPR032675 -
Cla10g00639 721 Gene3D Ribonuclease Inhibitor 173 271 IPR032675 -
Cla10g00639 721 ProSiteProfiles Leucine-rich repeat profile. 478 499 IPR001611 GO:0005515
Cla10g00639 721 Gene3D Ribonuclease Inhibitor 627 715 IPR032675 -
Cla10g00639 721 PANTHER LEUCINE RICH REPEAT CONTAINING PROTEIN 14 127 - -
Cla10g00639 721 PANTHER LRR RECEPTOR-LIKE KINASE 14 127 - -
Cla10g00639 721 Gene3D Ribonuclease Inhibitor 417 622 IPR032675 -
Cla10g00639 721 ProSiteProfiles Leucine-rich repeat profile. 583 604 IPR001611 GO:0005515
Cla10g00639 721 PANTHER LRR RECEPTOR-LIKE KINASE 337 720 - -
Cla10g00639 721 SMART LRR_typ_2 500 523 IPR003591 -
Cla10g00639 721 SMART LRR_typ_2 454 476 IPR003591 -
Cla10g00639 721 SMART LRR_typ_2 41 62 IPR003591 -
Cla10g00639 721 SMART LRR_typ_2 86 109 IPR003591 -
Cla10g00639 721 SMART LRR_typ_2 581 603 IPR003591 -
Cla10g00639 721 SMART LRR_typ_2 524 547 IPR003591 -
Cla10g00639 721 SMART LRR_typ_2 202 225 IPR003591 -
Cla10g00639 721 SMART LRR_typ_2 477 499 IPR003591 -
Cla10g00639 721 SMART LRR_typ_2 155 178 IPR003591 -
Cla10g00639 721 SMART LRR_typ_2 110 132 IPR003591 -
Cla10g00639 721 SMART LRR_typ_2 349 369 IPR003591 -
Cla10g00639 721 SMART LRR_typ_2 63 84 IPR003591 -
Cla10g00639 721 SMART LRR_typ_2 652 675 IPR003591 -
Cla10g00639 721 SMART LRR_typ_2 226 248 IPR003591 -
Cla10g00639 721 SMART LRR_typ_2 370 393 IPR003591 -
Cla10g00639 721 PANTHER LEUCINE RICH REPEAT CONTAINING PROTEIN 132 260 - -
Cla10g00639 721 Gene3D Ribonuclease Inhibitor 1 172 IPR032675 -
Cla10g00639 721 PRINTS Leucine-rich repeat signature 350 363 - -
Cla10g00639 721 PRINTS Leucine-rich repeat signature 581 594 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla10g00639 - - - jre:109013395 695.271
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla10g00639 Cla-Chr10:9705244 Cla01g02045 Cla-Chr1:34961047 5.22E-10 dispersed
Cla11g01127 Cla-Chr11:22972883 Cla10g00639 Cla-Chr10:9705244 2.19E-11 dispersed
Cla10g00639 Cla-Chr10:9705244 Cla05g02586 Cla-Chr5:37108171 2.15E-11 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g248 . . . . . . . . Cmo16g00848 . . . . . . . . . . . . . . . Cla10g00639 Cam10g0637 Cec10g0657 Cco10g0633 Clacu10g0660 Cmu10g1485 Cre10g0867 . . Cone14ag1071 Cone15ag1064 . Csa03g00619 . . . . . . . . . . . . . . Cma16g00786 . . Cpe14g00684 . . . . . . . . . . . . . . . Lsi05g00710 . Chy06g01706 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008065 1 2 0 1 1 2 1 1 1 1 1 1 1 1 1 1 3 1 1 1 1 1 1 1 1 1 1 1 1 1 33
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla10g00639 Cla_Chr10 FPKM 98.980637 109.286102 88.73716 86.613258 139.857391 131.56456 139.835342 11.565819 11.407981 9.647793