Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla10g00644 ATGGCGGCGGCTTCAGCGATTTTCAAAATCTTCAGGAGGTCATCTTCAGGCTGCACTAGAACAGCAAGAACAGAGACAGATGCATTTTATTTTGTGGTGTTGAGATTATACAGCGCAAGACGAAGCTGCGATCGAAGAAACCTCTTTGCGAGGATTAGTCCTCTTGGTGACCCTGAGCTTAGTGTAGTGCCGGTTCTTAATCAATGGATTGAGGAAGGCAGGAAGATCAAGGATTTTGAGCTCCGGAGAATCGTTCGCGACCTTCGTACTTCCCGGCGGTATGGGCAAGCCCTTGAGGTGAGCGCAATTGAAAAGCACGCCCTAATTTCCCGTGAAAAGAATGCTTGTATTGTGTCTGAATGGATGTGTAGCAAGGGACTTTTTTCCCTCACAACAAGAGACTTTGCCGTGCAGCTTGATTTGATTGGCCGAGTTCGTGGGTTGGATTCTGCAGAGAAGTATTTTGGCAGTGTTTCTAACCAAGAGGAAATTGGTAAACTCTATGGTGCTCTTCTAAATTGTTATGTCAGGGAAGGCCTTGTAGATAAGTCCCTTGCTCATATGCAGAAGATGAAGGAGATGGGTTTTGCTTCCTCTCCCCTCTGCTACAATGATATAATGTGTCTATATTTGAAAACTGGCCAGGCTGATAAGGTTCCAAATGTACTGTCTGAAATGAAGGAGAATGGTGTTCTTCCTGACAATTTTAGCTATAGAATTTGTATCAGTTCTTATGGAGCTAAGTCTGATGTAATCAGTATGGAAAAGGTCTTGAAAGAAATGGAGAGTCAAACTCACATATCCATGGATTGGACTACTTATTCAATGGTTGCCAGTTTTTTCATCAAAGCCAGTATGCATGAGAAAGCAATTAGTTATCTTCGGAAATGTGAGGACAAGCTTTGGGCTTCCTCTGGAGCCGAGGAGGGAAGGCCCATCGGTTCAGATGATCCGTCACAAATATATATCTCTAAAACGGAATCTTGCATCTCGCTGCTTTCCACTCTCATTTCCTTTCTTTTCTTGTTCGAACGTCTCCCTAAATTCTCTAAACCCCCAACTAAAATGGCTAGAGATCGAAATGGTGAGCTATCTACTAAGAGAGGAAGTTCCGATAACGACGAGCCCGGGGAGCGAGAAGGAGAAGACAACGGTGCTCCCTCAAAGAGAAGCTCCGGTAGGAATTCCGAGAAAGATCCTGAAAATTCGGGCTCCGATGTGGACGAAGGACGAAAACGCAGCAAATCAAGAAGAAAATCACGAGACAGTTCGGATTCCGATGAGAAACATGACAAGAAGCGTGGAAAGAGTTCGAGAAGAAAGGGCAAATCCCGTAGACGATACAGTAGTAGTGAGGAGGATTCTGATTCCGAGGATACCGAATCTGATAGCTCGATGTATGATTCGGATTCGGGGCACTCCGACGCGGAATCGGCTTCTAATAGTTCGGGTTCGGAAGGCGATAGCGAGAGCGAGGAGGAGAGGAGGAGGAGGAAGAGGAAGGAAAGGAGGAGGAGAAGAGACAAGGAGAGAGAGCGGAAGAGGAGGAGAAAAGAGAAGGAGAAGAAGAGGAGGAAAAAAGAGAGGGAGGAAGAGAAAAGAAGGAAGGAGAAGAAAAAGAAGGAGAAGAAGGAACGAGGAAAGAAAGGGGCAGTGACGAATTCGTGGGGAAAGTACGGGATTATCAAAGAAACTGATATGTGGAACAAACGACCGGAGTTCACTGCATGGTTGGCTGAAATTAAAAAGGTGAACTTGGAAAGCCTAGCCAATTGGGAAGAGAAGCAAATGTTTAAGGAATTCATGGAGGACCATAACACGGCCACTTTTCCATCCAAAAAGTACTACAATCTTGATGCCTATTACCAGCGTAAAATACAAAAAGATATGAAGAAAGGCCACAAAAAGGTTTTGGCAGGGGAACGCACTGTGTTTGATGATGAAGAACAGAGGAGGCAAGAACTACTCATAGAACGTGAAAAGCACAAGGAAGAACAAGTGGAAGCCTTGAAGCGCTCTATGCAGACTGGAATGGCCCAAGCAATGAAAGAACAAGCTCGACTCAGGGAGGAGATGGCTTACCAGTATAAACTTGGAAACTTTGAGGTCAGCGTCCCTCCCCACCCATCACCAGCTACTGCATCCGCCAACGCACACAGCAGTCCGCTGCCGCTCCTACCTGAAGCAGTCTCAGCGTCTGCCCCCATCCTCCCAACGAACTCGCCTCTGCTCTTCCCTCTCACGCTCTCTCGCCTCTCTGTGCAATCCGAGTTACTTAACTCTAAGGATATGGGAGGCAGAGGAGTCATTGGTGACAAATGGTCCATGAGGGTTCTCTGGGTCTGTGCTCTAGGAAGTGCAATCGGTTTGTATATGGTTGCTCAAGAAAGACAATTACAAAACAGGCAAAGAATGTTGGCTGAGAGTCTCAAAGATGCAGAATCAGGAAGCAGTGGTGAAAATGTGTAG 2469 46.17 MAAASAIFKIFRRSSSGCTRTARTETDAFYFVVLRLYSARRSCDRRNLFARISPLGDPELSVVPVLNQWIEEGRKIKDFELRRIVRDLRTSRRYGQALEVSAIEKHALISREKNACIVSEWMCSKGLFSLTTRDFAVQLDLIGRVRGLDSAEKYFGSVSNQEEIGKLYGALLNCYVREGLVDKSLAHMQKMKEMGFASSPLCYNDIMCLYLKTGQADKVPNVLSEMKENGVLPDNFSYRICISSYGAKSDVISMEKVLKEMESQTHISMDWTTYSMVASFFIKASMHEKAISYLRKCEDKLWASSGAEEGRPIGSDDPSQIYISKTESCISLLSTLISFLFLFERLPKFSKPPTKMARDRNGELSTKRGSSDNDEPGEREGEDNGAPSKRSSGRNSEKDPENSGSDVDEGRKRSKSRRKSRDSSDSDEKHDKKRGKSSRRKGKSRRRYSSSEEDSDSEDTESDSSMYDSDSGHSDAESASNSSGSEGDSESEEERRRRKRKERRRRRDKERERKRRRKEKEKKRRKKEREEEKRRKEKKKKEKKERGKKGAVTNSWGKYGIIKETDMWNKRPEFTAWLAEIKKVNLESLANWEEKQMFKEFMEDHNTATFPSKKYYNLDAYYQRKIQKDMKKGHKKVLAGERTVFDDEEQRRQELLIEREKHKEEQVEALKRSMQTGMAQAMKEQARLREEMAYQYKLGNFEVSVPPHPSPATASANAHSSPLPLLPEAVSASAPILPTNSPLLFPLTLSRLSVQSELLNSKDMGGRGVIGDKWSMRVLWVCALGSAIGLYMVAQERQLQNRQRMLAESLKDAESGSSGENV 822
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 9788820 9806129 - ClCG10G006860.2 Cla10g00644 282303

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla10g00644 822 MobiDBLite consensus disorder prediction 467 486 - -
Cla10g00644 822 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 199 233 IPR002885 -
Cla10g00644 822 MobiDBLite consensus disorder prediction 351 552 - -
Cla10g00644 822 PANTHER OS12G0527900 PROTEIN 35 301 - -
Cla10g00644 822 Coils Coil 491 547 - -
Cla10g00644 822 PANTHER PPR CONTAINING PLANT-LIKE PROTEIN 35 301 - -
Cla10g00644 822 Coils Coil 645 672 - -
Cla10g00644 822 TIGRFAM PPR: pentatricopeptide repeat domain 167 196 IPR002885 -
Cla10g00644 822 TIGRFAM PPR: pentatricopeptide repeat domain 202 234 IPR002885 -
Cla10g00644 822 Gene3D Tetratricopeptide repeat domain 89 315 IPR011990 GO:0005515
Cla10g00644 822 Pfam PPR repeat family 202 244 IPR002885 -
Cla10g00644 822 MobiDBLite consensus disorder prediction 524 538 - -
Cla10g00644 822 MobiDBLite consensus disorder prediction 498 523 - -
Cla10g00644 822 Pfam PPR repeat 168 196 IPR002885 -
Cla10g00644 822 MobiDBLite consensus disorder prediction 351 433 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla10g00644 - - - csv:101204020 504.597
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla10g00644 Cla-Chr10:9788820 Cla05g00271 Cla-Chr5:2448457 5.40E-46 dispersed
Cla10g00644 Cla-Chr10:9788820 Cla03g00559 Cla-Chr3:6272269 2.38E-94 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g243 Blo03g00650 . Bda07g00292 . . . . . . Cmo04g00975 . . . . . . . . . . . . . . Cla10g00644 Cam10g0640 Cec10g0662 Cco10g0637 Clacu10g0663 Cmu10g1490 Cre10g0872 . . . Cone15ag1062 . Csa03g00624 . . . . . . . Bpe01g00425 . Bma14g00231 . . . Cma04g00908 . Car04g00851 . . . . . . . . . . . . . . . . . Lsi05g00713 . Chy06g01702 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002999 3 1 2 3 1 1 1 1 1 2 1 1 1 2 1 2 1 1 1 1 2 2 1 1 3 1 2 2 2 0 44
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla10g00644 Cla_Chr10 FPKM 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.162845 0.200472 0.102125
Cla10g00644 Cla_Chr10 FPKM 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.191689 0.202261 0.130349