Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla10g00645 ATGGTAGATATGGTTTTTGGAAATAACAATGGGTTTGTTTGGGTTTTGTTTTGGTTTATTTTCATGGTGGTTGGTTTAGGTGAGTTCTTCGTCCATGGGGATAATGCTTGGTTTGATGCTCATGCAACTTTCTATGGTGCTGATCAAAACCCTACTAGTCTTGGAGGAGCATGTGGTTATGACAATACATTCCATGCGGGATTTGGAGTAAACACGGCGGCGGTAAGCGGCGTACTTTTCAGAGGCGGAGAGGCGTGCGGCGCTTGTTTTCTCGTAATTTGCAACTACAAAGTCGACCCTAAGTGGTGTCTTCGCCGCCGCGCTGTCACCGTCACCGCCACAAATTTTTGCCCGTCCAATAACAACGGCGGCTGGTGCGACCCCCCTCGGTCCCATTTCGACATGTCGTCACCTGCTTTTCTTACCATTGCTCGTCAAGGCAACGAAGGCATTGTCCCAGTCCTTTACAAGAGGGTGAGTTGTAGAAGAAAAGGAGGGGTTAGATTCACATTGAGAGGGCAATCAAACTTCAACATGGTGATGATATCGAACGTTGGAGGCAGTGGGGATGTGAAGGCTGCATGGGTAAGAGGGTCGAGGACGAGGACGTGGATGCCCATGCACCGAAACTGGGGGGCAAATTGGCAAGCCAACATCGACCTCCGAAACCAAAGAATGTCGTTTAAGCTCACTCTAGTTGATGGAACAACATTAGAGTTTTTCAATGTTGTTCCTTCCTCTTGGAGGTTTGGACAGACATTTTCGTCCATGAATCAATTCTCCTAG 786 48.09 MVDMVFGNNNGFVWVLFWFIFMVVGLGEFFVHGDNAWFDAHATFYGADQNPTSLGGACGYDNTFHAGFGVNTAAVSGVLFRGGEACGACFLVICNYKVDPKWCLRRRAVTVTATNFCPSNNNGGWCDPPRSHFDMSSPAFLTIARQGNEGIVPVLYKRVSCRRKGGVRFTLRGQSNFNMVMISNVGGSGDVKAAWVRGSRTRTWMPMHRNWGANWQANIDLRNQRMSFKLTLVDGTTLEFFNVVPSSWRFGQTFSSMNQFS 261
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 9839331 9842933 - ClCG10G006890.2 Cla10g00645 282304
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla10g00645 261 SUPERFAMILY Barwin-like endoglucanases 15 184 IPR036908 -
Cla10g00645 261 SMART dpbb_1 72 156 IPR007112 -
Cla10g00645 261 SUPERFAMILY PHL pollen allergen 163 256 IPR036749 -
Cla10g00645 261 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 176 256 IPR007117 -
Cla10g00645 261 Pfam Expansin C-terminal domain 167 245 IPR007117 -
Cla10g00645 261 Pfam Lytic transglycolase 72 156 IPR009009 -
Cla10g00645 261 Gene3D - 28 162 IPR036908 -
Cla10g00645 261 Gene3D - 166 260 IPR036749 -
Cla10g00645 261 PANTHER EXPANSIN-A12 15 261 - -
Cla10g00645 261 PANTHER EXPANSIN-A15 15 261 IPR002963 GO:0009664
Cla10g00645 261 PRINTS Expansin signature 67 81 IPR002963 GO:0009664
Cla10g00645 261 PRINTS Expansin signature 213 234 IPR002963 GO:0009664
Cla10g00645 261 PRINTS Expansin signature 109 119 IPR002963 GO:0009664
Cla10g00645 261 PRINTS Expansin signature 123 140 IPR002963 GO:0009664
Cla10g00645 261 PRINTS Expansin signature 177 198 IPR002963 GO:0009664
Cla10g00645 261 PRINTS Expansin signature 242 258 IPR002963 GO:0009664
Cla10g00645 261 PRINTS Expansin signature 165 177 IPR002963 GO:0009664
Cla10g00645 261 PRINTS Expansin signature 96 107 IPR002963 GO:0009664
Cla10g00645 261 PRINTS Expansin/Lol pI family signature 54 72 IPR007118 GO:0005576
Cla10g00645 261 PRINTS Expansin/Lol pI family signature 149 165 IPR007118 GO:0005576
Cla10g00645 261 PRINTS Expansin/Lol pI family signature 36 51 IPR007118 GO:0005576
Cla10g00645 261 PRINTS Expansin/Lol pI family signature 76 94 IPR007118 GO:0005576
Cla10g00645 261 PRINTS Expansin/Lol pI family signature 204 218 IPR007118 GO:0005576
Cla10g00645 261 PRINTS Expansin/Lol pI family signature 242 256 IPR007118 GO:0005576
Cla10g00645 261 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 55 166 IPR007112 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla10g00645 Cla-Chr10:9839331 Cla08g01405 Cla-Chr8:26945619 1.35E-93 dispersed
Cla10g00645 Cla-Chr10:9839331 Cla07g00480 Cla-Chr7:6785317 3.46E-82 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla10g00645 - - bhj:120091876 517.694