Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla10g00647 ATGGTCAAGTTAATTTGGAATTTAAGTTCGAGTTGGGTACAAGTACAAGATCCAAATCCAAATCCGACTTACGACGTAAATAATGGGAGGACGGCACCTGTCACCCACGTGCTAGAGTTCTATTGGTCTGTGTTTGAACTTGTATCAACGTCACGGTACGCCAGTCCCCAGCATCCTCATCCATTCGTCCTCCATTCATTGCCACATCAAACCAAAACCCCGAATTTCCCCAATTTTGCCCAAACTTCTCCCTCGCAAGTCGCAACCACCATCACCCATCAATCCCTTCCTCCGATGGCTACGGTTCTCGATTCCCTCACTCTTCCCTGTTCCTCCGCCTTGGCTTCCACCGCTTTCTCCGGCCGTCGGAGTTCCGTCGCTCTCCCGCAGTGCAGAGGCTTGAAGATCGCTCACAGCTTCACTTCCCACTCTATAAGATCTGCCAGATCTAATGCTAGATTTACTCAGCGTTCGGCAACTATCGTTTGCGAAGCTCAGGAAACTGCTGCCATTGGTTCGGATTCTGTTCTGCTATTTTCTTTTACTGTCTTTTTCTCTTGTTGGGATAAGAGCCACTGTTTACCTTGCATGACATCAGATTCTGAATCTTTTACAATAGTACCTGCTGCTTCAGAAGCTACCTGGAAGTCACTGGTTATAGAATCTAAATTACCCGTACTAGTTGAATTCTGGGCTCCATGGTGCGGTCCTTGCCGCATGATTCATCCAATCATTGATGACCTATCTAAAGAGTACGCTGGAAAGTTCAAATTTTACAAGGTGGATACCGATAACAACTCTTCAATTGCATCCCAATATGGTATTAGAAGCATACCTACAGTCATTATCTTCAAAGATGGTGAGAAGAAGGAGGCAATAATAGGTGCAGTTCCTAAAGCAACTTTGACAGCCAGCATGGAAAAATTCTTGTAG 933 45.55 MVKLIWNLSSSWVQVQDPNPNPTYDVNNGRTAPVTHVLEFYWSVFELVSTSRYASPQHPHPFVLHSLPHQTKTPNFPNFAQTSPSQVATTITHQSLPPMATVLDSLTLPCSSALASTAFSGRRSSVALPQCRGLKIAHSFTSHSIRSARSNARFTQRSATIVCEAQETAAIGSDSVLLFSFTVFFSCWDKSHCLPCMTSDSESFTIVPAASEATWKSLVIESKLPVLVEFWAPWCGPCRMIHPIIDDLSKEYAGKFKFYKVDTDNNSSIASQYGIRSIPTVIIFKDGEKKEAIIGAVPKATLTASMEKFL 310
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 9868671 9871869 - ClCG10G006910.2 Cla10g00647 282306

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla10g00647 310 SUPERFAMILY Thioredoxin-like 207 310 IPR036249 -
Cla10g00647 310 ProSiteProfiles Thioredoxin domain profile. 195 310 IPR013766 -
Cla10g00647 310 TIGRFAM thioredoxin: thioredoxin 211 309 IPR005746 GO:0015035
Cla10g00647 310 PRINTS Thioredoxin family signature 226 234 - -
Cla10g00647 310 PRINTS Thioredoxin family signature 234 243 - -
Cla10g00647 310 PRINTS Thioredoxin family signature 274 285 - -
Cla10g00647 310 ProSitePatterns Thioredoxin family active site. 227 245 IPR017937 -
Cla10g00647 310 Gene3D Glutaredoxin 207 310 - -
Cla10g00647 310 PANTHER THIOREDOXIN M4, CHLOROPLASTIC 99 170 - -
Cla10g00647 310 PANTHER THIOREDOXIN M4, CHLOROPLASTIC 201 309 - -
Cla10g00647 310 PANTHER GEO12009P1 99 170 - -
Cla10g00647 310 PANTHER GEO12009P1 201 309 - -
Cla10g00647 310 CDD TRX_family 213 307 - -
Cla10g00647 310 Pfam Thioredoxin 210 307 IPR013766 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla10g00647 K03671 trxA; thioredoxin 1 - csv:101204508 302.367
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla02g00604 Cla-Chr2:6626552 Cla10g00647 Cla-Chr10:9868671 4.02E-34 dispersed
Cla08g00232 Cla-Chr8:4663240 Cla10g00647 Cla-Chr10:9868671 5.65E-20 dispersed
Cla08g00654 Cla-Chr8:18791332 Cla10g00647 Cla-Chr10:9868671 6.25E-41 dispersed
Cla10g00647 Cla-Chr10:9868671 Cla05g01907 Cla-Chr5:30917341 2.34E-14 dispersed
Cla10g00647 Cla-Chr10:9868671 Cla05g02485 Cla-Chr5:36252861 7.93E-16 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g240 . . . . . . Bma10g00502 . Cmo16g00845 Cmo04g00973 . . . . . . . . . . . . . . Cla10g00647 Cam10g0643 Cec10g0664 Cco10g0639 Clacu10g0666 Cmu10g1493 Cre10g0874 . . Cone14ag1070 Cone15ag1059 . Csa03g00627 . . . . . Bda12g00865 . Bpe03g00834 . . . . . Cma04g00906 Cma16g00782 Car04g00849 . Cpe14g00681 . . . . . . . . . . . . . . . Lsi05g00715 . Chy06g01700 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004200 2 2 2 4 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 1 1 2 43