Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla10g00660 ATGGCTCCGATTTCTCTGCAACTCACCCCCTTCATTTCCCCACTACTCCACCACCGCAATCTCTGCCTTCACAGACCCCCAATTCCTCGTCTCTCCCCGCCGAAGCTTCCCATATTGCTCGCCGTCCGATCGCTTCAACGAAATAATGAACACCCATCTCCGTCGCCCCCGCCCCCGCCGCAAAAACCCACCGGTTTGGACCATTTTCTTTCGATGGCCGCGAGTCTCTACCCTCTCTATGTGACGGCCGGCGGCATTGTTGCTTGTCTGAAACCGTCGACCTTCTCGTGGTTTGTGCAGAGAGGGCCCGCTTCATATAGCTTTTCTCTTGGTTTGATTATGTTGACCATGGGGCTTACGCTAGAGCTCAAGGATTTGTTCAATTTGTTCATGCAGAGACCTCTTTCTATATTGTTTGGCTGTGTAGCTCAGTACACGATTATGCCGGCTTCTGCAGCCCTTATCGGAAAATTTTTCGGGCTCTCGCCGTCGCTTTTGGTCGGTTTGATCTTGCTTGGATGTTGCCCTGGAGGAACTGCCTCCAATGTGATTTCCGATCGCCATTACTTCAATCAAATAGTATTTCAGGTAACCTTAATTGCTCAAGGCGACGTTCCTTTGTCTATTGTAATGACAGTATGCACAACTCTAGGAGCCATAATTTTCACTCCCTTTCTGACAAAAATACTAGCAGGAGCTTACATTCCAGTCAACGTTGCACAGCTTTCTCTCAGCACCCTTCAGGTGGTGGTAGCTCCTATTCTGTTAGGTTCTTGGTTGCAGAAGGCATTTCCTTCGCTGGTGAAATTGGTGTTACCATTCGCACCAGTTATTGCTGTATTAACTTCTTCGCTGCTTGCTTGCAGTGTCTTCTCGGAGAACATCGTTCGTTTCAAATCGTCAATGGTTAGTGCCACATTAGCCTCTGATGCATCTCTATGGACAGTTCTTCAAAGTATATTATCGGGGGAGTTGGGAGTAGTAATACTTTCGGTGATTTGTTTACACTTTGCTGGTTTCTTCGTCGGATATATAGCAGCTGCTATCGGTGGGTTTCGGGAACAAGAACGAAGAGCTATATCCATTGAGGTTGGGATGCAGAGTTCATCATTGGGAGTTGTTTTGGCAACCTCACATTTCAGTTCAGCAATGGTTGCATTGCCCCCAGCAATGTCAGCTGTTATAATGAACATAATGGGGAGCACTCTTGCGTTTTGTTGGAGATATGTTGAACCTTCTGATGAAGTGAAAACCAGTGTTGTTGCCAAGTGA 1272 47.25 MAPISLQLTPFISPLLHHRNLCLHRPPIPRLSPPKLPILLAVRSLQRNNEHPSPSPPPPPQKPTGLDHFLSMAASLYPLYVTAGGIVACLKPSTFSWFVQRGPASYSFSLGLIMLTMGLTLELKDLFNLFMQRPLSILFGCVAQYTIMPASAALIGKFFGLSPSLLVGLILLGCCPGGTASNVISDRHYFNQIVFQVTLIAQGDVPLSIVMTVCTTLGAIIFTPFLTKILAGAYIPVNVAQLSLSTLQVVVAPILLGSWLQKAFPSLVKLVLPFAPVIAVLTSSLLACSVFSENIVRFKSSMVSATLASDASLWTVLQSILSGELGVVILSVICLHFAGFFVGYIAAAIGGFREQERRAISIEVGMQSSSLGVVLATSHFSSAMVALPPAMSAVIMNIMGSTLAFCWRYVEPSDEVKTSVVAK 423
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 10042918 10045792 - ClCG10G007030.2 Cla10g00660 282319

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla10g00660 423 Gene3D - 64 409 IPR038770 -
Cla10g00660 423 PANTHER SODIUM/METABOLITE COTRANSPORTER BASS2, CHLOROPLASTIC-RELATED 61 414 - -
Cla10g00660 423 Pfam Sodium Bile acid symporter family 109 295 IPR002657 GO:0016020
Cla10g00660 423 PANTHER SODIUM-BILE ACID COTRANSPORTER 61 414 IPR004710 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla10g00660 K03453 TC.BASS; bile acid:Na+ symporter, BASS family - csv:101206254 636.721
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cla05g00998 Cla10g00660 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla10g00660 Cla-Chr10:10042918 Cla11g01679 Cla-Chr11:30375860 2.65E-62 dispersed
Cla10g00660 Cla-Chr10:10042918 Cla10g00662 Cla-Chr10:10062151 6.00E-176 proximal
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi19g170 . . . . Bpe09g00245 . . Bma13g00940 Cmo16g00439 . . . . . . . . . . . . . . . Cla10g00660 Cam10g0656 Cec10g0680 Cco10g0652 Clacu10g0679 Cmu10g1503 Cre10g0883 . . Cone14ag1047 Cone15ag1035 . . . . . Blo10g00749 . Bda12g00871 . . . . . . . . Cma16g00407 . Car16g00371 Cpe14g00341 . . . . . . . . Cla05g00998 Cam05g1089 Cec05g1097 Cco05g1091 Clacu05g1083 Cmu05g1033 Cre05g1108 . . Chy06g01166 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003304 1 3 1 1 1 2 2 2 2 2 2 2 2 2 2 2 2 1 1 2 2 1 2 1 2 2 1 1 2 1 50
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla10g00660 Cla_Chr10 FPKM 0.816571 0.861645 1.01815 1.387056 1.628139 1.826354 2.366003 1.617311 1.199761 1.095742