Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla10g00707 ATGACAAAAAAGCAAAAGCTCTACTTAGAGAATATTCTACATCAACTTGAGTCTCCTCATAACAACCCTGCTCATTGGTATCGGTTCATGGCATCAGTCTTGTTTCCATTAAACAATCTTTCGGGCATGGGGTTGTTTACAAATGGGCTACAAGGATTTTCTGCAGATTCAGATGATTTGGATAGCATTCTTGCATCAATAAAAGACCTTGACATCACTCCTGAAAAGATTAGGGAATTTCTGCCAAAAGTTAATTGGGACAAATTGGCTTCCATGTATCTTCGGGGTCGCTCAGGGGCAGAATGTGAAGCGAGGTGGTTGAATTTCGAAGACCCCCTAATTAATCGGGATCCATGGACTACAAGTGAGGATAAGAATCTTTTGTTTACTATCCAACAGAAGGGGTTGAATAACTGGATTGAGATAGCAGTTTCGTCGGGTACAAATAGAACTCCTTTTCAGTGCTTGTCTCGGTATCAAAGGAGTTTAAATGCTTCCATATTAAAGAGGGAGTGGACCAAAGACGAGGATGATAAACTTCGAGCTGCTGTTGCTACATTTGGCCTGGGAGATTGGTGGAAAAAATCCCTTGACCCAGCTAGGACAAAAAGAGGTCATTTCACTCCAGATGAAGACAGTCGCTTGAAAATTGCTGTACTGCTCTTTGGGCCTAAAAATTGGAACAAGAAAGCAGAATTTTTACCTGGTCGAAATCAAGTTCAATGCAGAGAAAGATGGTTTAATTGTTTAGATCCTTCCTTGAGAAGATGCGAATGGACAGAAGAGGAGGATTTAAGGCTGGAGATAGCAATTCAGGAACATGGATATAGCTGGGCTAAGGTAGCTGCATGTGTGCCGTCACGTACAGATAATGATTGTCGGAGGAGATGGAAGAAGTTATTTCCCAATGAAGTTCCGTTACTCCAGGAAGCTAGAAAGATTCAGAAGGCTGCTCTTATTAGCAACTTTGTTGATAGGGAATCAGAGCGTCCTGCTCTTGGTCCTACTGAATTTCGACCCAGGCCAAACACAGATTTATTGTGTAATAGTGTTGATCCAAGACCTGCCCCAAAAAGAAATGTGAAGACGAGAAAGATGCCAGTGTCAAGGAATGAAAAGAGTGCTACTGGTGATGCTCCAAAGAAGAGGAAATCAAATTGCCAGAGGAATCAGGCTGATGTAACTGCTCAGGCGGGTACTCTAAATAATACCTCTTCTGTCCCAGAGGAGGTTAAATCTCTAAAGCCTCAAAGAAAACAAAATAGACATGGAGCTTATACCGCAGAAAGTATAGGGGTTCCGGAGCTATGTCCTAACAGTGAGTGGTGTGCTAAACAGAGTTTGGACACTCAGAGCCTTGGGGTGCAGCTTAATAGTAAGGAATCTGAGGGGACCAACAGCGACTGCATCGAGACTGTTGATGAGAATGGTATGGAGGTATTTGAGAACAAAGTTGCAGAGAAACTTTCTGAAAGAGATGTATGTTTTTCAGAACCAGAAGCAATTCAAAACTCTACCGGATCTTCTGGAGTCTCGGTATTGTCAGAAATGACTAATGACATGGATGAATACAATCCGTCTATCCTTCCAGATACAACATTGTTGGCTAGTATTACTGTGGATGATCTCAAAGAATTGAAGAGGAAGAGTGTTGCAGACAGAGATCTGGATGACTGTAACAGTTTCTCGTTACCGTGCAGTGACTTGGAACTCAGGACAATCGACAAAGAAGGTGTGGACAGTTATTCCATGGATGAATTTACAGATAAAAGCCATGAGGTTTGCAAGCCCCCCCATACCAGAAGGAAGAAAAACAGCAAAACATCAAGTAAGAGCCAGGATCATTCCTTTGTTTCTTGTCAACAAGTGGAGTTGGAGAGGTCGGGGACAAATGAACCTCGTCATCATAATCAATCAAAGAAGAGAAAACATAACAGTACAAATACGAATCTGGAGGCAGTTGAGGAGGTTGATGACTGCACACTCGTGGGCTTTTTGCAAAAAAGATTGAAGAGGACGACGACAACAAATGACAAGAAAGTTGATTGCAGTTCAAGTACTCCCCTAGAAGTTGATACTGATGACAACGATCCTACCCTTGCCTCGTTTCTTAATAAATTAAAGAGAAAAAAGCATCAGCCGAGTAGTGGTGGTGAGTTAAACTAG 2166 42.15 MTKKQKLYLENILHQLESPHNNPAHWYRFMASVLFPLNNLSGMGLFTNGLQGFSADSDDLDSILASIKDLDITPEKIREFLPKVNWDKLASMYLRGRSGAECEARWLNFEDPLINRDPWTTSEDKNLLFTIQQKGLNNWIEIAVSSGTNRTPFQCLSRYQRSLNASILKREWTKDEDDKLRAAVATFGLGDWWKKSLDPARTKRGHFTPDEDSRLKIAVLLFGPKNWNKKAEFLPGRNQVQCRERWFNCLDPSLRRCEWTEEEDLRLEIAIQEHGYSWAKVAACVPSRTDNDCRRRWKKLFPNEVPLLQEARKIQKAALISNFVDRESERPALGPTEFRPRPNTDLLCNSVDPRPAPKRNVKTRKMPVSRNEKSATGDAPKKRKSNCQRNQADVTAQAGTLNNTSSVPEEVKSLKPQRKQNRHGAYTAESIGVPELCPNSEWCAKQSLDTQSLGVQLNSKESEGTNSDCIETVDENGMEVFENKVAEKLSERDVCFSEPEAIQNSTGSSGVSVLSEMTNDMDEYNPSILPDTTLLASITVDDLKELKRKSVADRDLDDCNSFSLPCSDLELRTIDKEGVDSYSMDEFTDKSHEVCKPPHTRRKKNSKTSSKSQDHSFVSCQQVELERSGTNEPRHHNQSKKRKHNSTNTNLEAVEEVDDCTLVGFLQKRLKRTTTTNDKKVDCSSSTPLEVDTDDNDPTLASFLNKLKRKKHQPSSGGELN 721
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 11074243 11085606 + ClCG10G007485.1 Cla10g00707 282366
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla10g00707 721 MobiDBLite consensus disorder prediction 365 388 - -
Cla10g00707 721 MobiDBLite consensus disorder prediction 611 627 - -
Cla10g00707 721 Gene3D - 258 304 - -
Cla10g00707 721 PANTHER SNRNA-ACTIVATING PROTEIN COMPLEX SUBUNIT 4 55 658 - -
Cla10g00707 721 CDD SANT 207 248 IPR001005 -
Cla10g00707 721 MobiDBLite consensus disorder prediction 331 423 - -
Cla10g00707 721 Gene3D - 113 162 - -
Cla10g00707 721 Gene3D - 163 195 - -
Cla10g00707 721 Pfam Myb-like DNA-binding domain 204 250 IPR001005 -
Cla10g00707 721 Pfam Myb-like DNA-binding domain 257 300 IPR001005 -
Cla10g00707 721 Pfam Myb-like DNA-binding domain 119 180 - -
Cla10g00707 721 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 111 167 IPR017930 -
Cla10g00707 721 ProSiteProfiles Myb-like domain profile. 111 163 IPR001005 -
Cla10g00707 721 ProSiteProfiles Myb-like domain profile. 199 250 IPR001005 -
Cla10g00707 721 SMART sant 255 303 IPR001005 -
Cla10g00707 721 SMART sant 168 252 IPR001005 -
Cla10g00707 721 SMART sant 68 112 IPR001005 -
Cla10g00707 721 SMART sant 115 165 IPR001005 -
Cla10g00707 721 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 203 250 IPR017930 -
Cla10g00707 721 CDD SANT 258 301 IPR001005 -
Cla10g00707 721 Gene3D - 196 256 - -
Cla10g00707 721 SUPERFAMILY Homeodomain-like 84 128 IPR009057 -
Cla10g00707 721 MobiDBLite consensus disorder prediction 674 698 - -
Cla10g00707 721 MobiDBLite consensus disorder prediction 679 693 - -
Cla10g00707 721 SUPERFAMILY Homeodomain-like 201 297 IPR009057 -
Cla10g00707 721 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 251 305 IPR017930 -
Cla10g00707 721 MobiDBLite consensus disorder prediction 389 411 - -
Cla10g00707 721 SUPERFAMILY Homeodomain-like 117 193 IPR009057 -
Cla10g00707 721 MobiDBLite consensus disorder prediction 590 650 - -
Cla10g00707 721 ProSiteProfiles Myb-like domain profile. 251 301 IPR001005 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla05g01516 Cla-Chr5:24750910 Cla10g00707 Cla-Chr10:11074243 2.37E-07 dispersed
Cla10g00707 Cla-Chr10:11074243 Cla10g02008 Cla-Chr10:35889665 5.54E-09 dispersed
Cla10g00707 Cla-Chr10:11074243 Cla04g01239 Cla-Chr4:27505759 9.10E-08 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
61856 PF13921 Myb_DNA-bind_6 2.20E-08 CL0123 Cla TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla10g00707 K09422 - csv:101216287 1081.63