Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla10g00707 ATGACAAAAAAGCAAAAGCTCTACTTAGAGAATATTCTACATCAACTTGAGTCTCCTCATAACAACCCTGCTCATTGGTATCGGTTCATGGCATCAGTCTTGTTTCCATTAAACAATCTTTCGGGCATGGGGTTGTTTACAAATGGGCTACAAGGATTTTCTGCAGATTCAGATGATTTGGATAGCATTCTTGCATCAATAAAAGACCTTGACATCACTCCTGAAAAGATTAGGGAATTTCTGCCAAAAGTTAATTGGGACAAATTGGCTTCCATGTATCTTCGGGGTCGCTCAGGGGCAGAATGTGAAGCGAGGTGGTTGAATTTCGAAGACCCCCTAATTAATCGGGATCCATGGACTACAAGTGAGGATAAGAATCTTTTGTTTACTATCCAACAGAAGGGGTTGAATAACTGGATTGAGATAGCAGTTTCGTCGGGTACAAATAGAACTCCTTTTCAGTGCTTGTCTCGGTATCAAAGGAGTTTAAATGCTTCCATATTAAAGAGGGAGTGGACCAAAGACGAGGATGATAAACTTCGAGCTGCTGTTGCTACATTTGGCCTGGGAGATTGGTGGAAAAAATCCCTTGACCCAGCTAGGACAAAAAGAGGTCATTTCACTCCAGATGAAGACAGTCGCTTGAAAATTGCTGTACTGCTCTTTGGGCCTAAAAATTGGAACAAGAAAGCAGAATTTTTACCTGGTCGAAATCAAGTTCAATGCAGAGAAAGATGGTTTAATTGTTTAGATCCTTCCTTGAGAAGATGCGAATGGACAGAAGAGGAGGATTTAAGGCTGGAGATAGCAATTCAGGAACATGGATATAGCTGGGCTAAGGTAGCTGCATGTGTGCCGTCACGTACAGATAATGATTGTCGGAGGAGATGGAAGAAGTTATTTCCCAATGAAGTTCCGTTACTCCAGGAAGCTAGAAAGATTCAGAAGGCTGCTCTTATTAGCAACTTTGTTGATAGGGAATCAGAGCGTCCTGCTCTTGGTCCTACTGAATTTCGACCCAGGCCAAACACAGATTTATTGTGTAATAGTGTTGATCCAAGACCTGCCCCAAAAAGAAATGTGAAGACGAGAAAGATGCCAGTGTCAAGGAATGAAAAGAGTGCTACTGGTGATGCTCCAAAGAAGAGGAAATCAAATTGCCAGAGGAATCAGGCTGATGTAACTGCTCAGGCGGGTACTCTAAATAATACCTCTTCTGTCCCAGAGGAGGTTAAATCTCTAAAGCCTCAAAGAAAACAAAATAGACATGGAGCTTATACCGCAGAAAGTATAGGGGTTCCGGAGCTATGTCCTAACAGTGAGTGGTGTGCTAAACAGAGTTTGGACACTCAGAGCCTTGGGGTGCAGCTTAATAGTAAGGAATCTGAGGGGACCAACAGCGACTGCATCGAGACTGTTGATGAGAATGGTATGGAGGTATTTGAGAACAAAGTTGCAGAGAAACTTTCTGAAAGAGATGTATGTTTTTCAGAACCAGAAGCAATTCAAAACTCTACCGGATCTTCTGGAGTCTCGGTATTGTCAGAAATGACTAATGACATGGATGAATACAATCCGTCTATCCTTCCAGATACAACATTGTTGGCTAGTATTACTGTGGATGATCTCAAAGAATTGAAGAGGAAGAGTGTTGCAGACAGAGATCTGGATGACTGTAACAGTTTCTCGTTACCGTGCAGTGACTTGGAACTCAGGACAATCGACAAAGAAGGTGTGGACAGTTATTCCATGGATGAATTTACAGATAAAAGCCATGAGGTTTGCAAGCCCCCCCATACCAGAAGGAAGAAAAACAGCAAAACATCAAGTAAGAGCCAGGATCATTCCTTTGTTTCTTGTCAACAAGTGGAGTTGGAGAGGTCGGGGACAAATGAACCTCGTCATCATAATCAATCAAAGAAGAGAAAACATAACAGTACAAATACGAATCTGGAGGCAGTTGAGGAGGTTGATGACTGCACACTCGTGGGCTTTTTGCAAAAAAGATTGAAGAGGACGACGACAACAAATGACAAGAAAGTTGATTGCAGTTCAAGTACTCCCCTAGAAGTTGATACTGATGACAACGATCCTACCCTTGCCTCGTTTCTTAATAAATTAAAGAGAAAAAAGCATCAGCCGAGTAGTGGTGGTGAGTTAAACTAG 2166 42.15 MTKKQKLYLENILHQLESPHNNPAHWYRFMASVLFPLNNLSGMGLFTNGLQGFSADSDDLDSILASIKDLDITPEKIREFLPKVNWDKLASMYLRGRSGAECEARWLNFEDPLINRDPWTTSEDKNLLFTIQQKGLNNWIEIAVSSGTNRTPFQCLSRYQRSLNASILKREWTKDEDDKLRAAVATFGLGDWWKKSLDPARTKRGHFTPDEDSRLKIAVLLFGPKNWNKKAEFLPGRNQVQCRERWFNCLDPSLRRCEWTEEEDLRLEIAIQEHGYSWAKVAACVPSRTDNDCRRRWKKLFPNEVPLLQEARKIQKAALISNFVDRESERPALGPTEFRPRPNTDLLCNSVDPRPAPKRNVKTRKMPVSRNEKSATGDAPKKRKSNCQRNQADVTAQAGTLNNTSSVPEEVKSLKPQRKQNRHGAYTAESIGVPELCPNSEWCAKQSLDTQSLGVQLNSKESEGTNSDCIETVDENGMEVFENKVAEKLSERDVCFSEPEAIQNSTGSSGVSVLSEMTNDMDEYNPSILPDTTLLASITVDDLKELKRKSVADRDLDDCNSFSLPCSDLELRTIDKEGVDSYSMDEFTDKSHEVCKPPHTRRKKNSKTSSKSQDHSFVSCQQVELERSGTNEPRHHNQSKKRKHNSTNTNLEAVEEVDDCTLVGFLQKRLKRTTTTNDKKVDCSSSTPLEVDTDDNDPTLASFLNKLKRKKHQPSSGGELN 721
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 11074243 11085606 + ClCG10G007485.1 Cla10g00707 282366

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla10g00707 721 MobiDBLite consensus disorder prediction 365 388 - -
Cla10g00707 721 MobiDBLite consensus disorder prediction 611 627 - -
Cla10g00707 721 Gene3D - 258 304 - -
Cla10g00707 721 PANTHER SNRNA-ACTIVATING PROTEIN COMPLEX SUBUNIT 4 55 658 - -
Cla10g00707 721 CDD SANT 207 248 IPR001005 -
Cla10g00707 721 MobiDBLite consensus disorder prediction 331 423 - -
Cla10g00707 721 Gene3D - 113 162 - -
Cla10g00707 721 Gene3D - 163 195 - -
Cla10g00707 721 Pfam Myb-like DNA-binding domain 204 250 IPR001005 -
Cla10g00707 721 Pfam Myb-like DNA-binding domain 257 300 IPR001005 -
Cla10g00707 721 Pfam Myb-like DNA-binding domain 119 180 - -
Cla10g00707 721 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 111 167 IPR017930 -
Cla10g00707 721 ProSiteProfiles Myb-like domain profile. 111 163 IPR001005 -
Cla10g00707 721 ProSiteProfiles Myb-like domain profile. 199 250 IPR001005 -
Cla10g00707 721 SMART sant 255 303 IPR001005 -
Cla10g00707 721 SMART sant 168 252 IPR001005 -
Cla10g00707 721 SMART sant 68 112 IPR001005 -
Cla10g00707 721 SMART sant 115 165 IPR001005 -
Cla10g00707 721 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 203 250 IPR017930 -
Cla10g00707 721 CDD SANT 258 301 IPR001005 -
Cla10g00707 721 Gene3D - 196 256 - -
Cla10g00707 721 SUPERFAMILY Homeodomain-like 84 128 IPR009057 -
Cla10g00707 721 MobiDBLite consensus disorder prediction 674 698 - -
Cla10g00707 721 MobiDBLite consensus disorder prediction 679 693 - -
Cla10g00707 721 SUPERFAMILY Homeodomain-like 201 297 IPR009057 -
Cla10g00707 721 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 251 305 IPR017930 -
Cla10g00707 721 MobiDBLite consensus disorder prediction 389 411 - -
Cla10g00707 721 SUPERFAMILY Homeodomain-like 117 193 IPR009057 -
Cla10g00707 721 MobiDBLite consensus disorder prediction 590 650 - -
Cla10g00707 721 ProSiteProfiles Myb-like domain profile. 251 301 IPR001005 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla10g00707 K09422 MYBP; transcription factor MYB, plant - csv:101216287 1081.63
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla05g01516 Cla-Chr5:24750910 Cla10g00707 Cla-Chr10:11074243 2.37E-07 dispersed
Cla10g00707 Cla-Chr10:11074243 Cla10g02008 Cla-Chr10:35889665 5.54E-09 dispersed
Cla10g00707 Cla-Chr10:11074243 Cla04g01239 Cla-Chr4:27505759 9.10E-08 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cla06g00952 . 1 818 MYB-Related Transcription Factor Family AT1G09770 77.6 0.0e+00 1208.7
Cla05g01516 . 385 898 MYB-Related Transcription Factor Family AT3G18100 51.6 4.6e-144 508.8
Cla10g00707 . 59 333 MYB-Related Transcription Factor Family AT3G18100 56.0 3.2e-89 326.6
Cla05g01516 . 385 898 MYB-Related Transcription Factor Family AT3G18100 51.6 4.6e-144 508.8
Cla10g00707 . 59 333 MYB-Related Transcription Factor Family AT3G18100 56.0 3.2e-89 326.6
Cla06g00952 . 1 818 MYB-Related Transcription Factor Family AT1G09770 77.6 0.0e+00 1208.7
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002922 1 9 2 2 1 2 1 1 1 1 3 3 1 1 1 1 3 1 1 1 1 1 1 2 2 2 1 3 1 1 52
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
61856 PF13921 Myb_DNA-bind_6 2.20E-08 CL0123 Cla TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla10g00707 Cla_Chr10 FPKM 4.349536 4.135667 7.624939 7.011501 2.709946 1.670009 2.257587 3.389841 2.717713 3.533528