Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla10g00714 ATGTTGGTTCTTAGATCCGTTTTCGAAAGGACTTTGGAGAAGGTCGAGATTGGAGGAGCTAGTGGTTGGGAATCTGAAATTGGGTGTTTTGGTTGGTTTTGGCTTTGGTCATTTTTAAGCGTATCCTCAGTGATGGTTGATTATGTTCGAGATGACTGCTATGTCATGGTGATTGTTATCCTATTTTGGTTGATTATGTTCGTGATGACTGCTATGTTACGGTGTCCCTCGGGATCACCACTTATGTTTATGTTTATGACTGTGACCTTCGGGATCCTTACGTGCCTTCGGATAATGGAGGGAATGCCGCACCCAATACCCCGTACAGTGGAGGAGGTCTACGGCGACTTCAAAGGCAGGCGTGCCGGCTTGATCAAAGCCCTCACCACTGATGTCGAGAAGTTCTACCAGCAGTGCGATCCTGAGAAGGAGAACTTGTGTCTCTATGGACTTCCAAATGAAACGTGGGAAGTTAACTTGCCGGTGGAGGAGGTGCCTCCTGAGCTCCCGGAACCAGCATTAGGTATAAACTTTGCAAGGGATGGGATGCAGGAGAAAGACTGGTTATCACTGGTTGCAGTTCACAGTGACTCATGGTTGCTTGCTGTTGCATTCTATTTTGGTGCTCGTTTTGGGTTTGGGAAGACTGAAAGGAAGAGGCTATTCCAGATGATCAACGATCTCCCAAGTGTATTTGAAGTTGTGACTGGAAATGGTAAGCAGTCGAAAGAGCAGTCTGCCACACATAACAATGGCAGTAAAAGCAAGTCGAGTGGAAAGATGTCCCGGCAATTGGAGTCCCATAGCAAGGGAGTGAAGATGTCTCCACCACCGAAAGAGGATGAAGATAGCGGGGAAGATGAGGAGGAAGAAGAAGACGATGAACAGGGTGCAACATGTGGGGCTTGTGGGGACAACTACGGCAATGACGAATTCTGGATTTGTTGCGATGTGTGTGAAAGATGGTTCCATGGAAAATGTGTGAAGATTACACCTGCAAAGGCGGAGCATATCAAGCAATACAAGTGTCCAAGTTGCAGTAACAAGAGAGCAAGGGTTTGA 1062 47.08 MLVLRSVFERTLEKVEIGGASGWESEIGCFGWFWLWSFLSVSSVMVDYVRDDCYVMVIVILFWLIMFVMTAMLRCPSGSPLMFMFMTVTFGILTCLRIMEGMPHPIPRTVEEVYGDFKGRRAGLIKALTTDVEKFYQQCDPEKENLCLYGLPNETWEVNLPVEEVPPELPEPALGINFARDGMQEKDWLSLVAVHSDSWLLAVAFYFGARFGFGKTERKRLFQMINDLPSVFEVVTGNGKQSKEQSATHNNGSKSKSSGKMSRQLESHSKGVKMSPPPKEDEDSGEDEEEEEDDEQGATCGACGDNYGNDEFWICCDVCERWFHGKCVKITPAKAEHIKQYKCPSCSNKRARV 353
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 11292447 11302431 - ClCG10G007570.2 Cla10g00714 282373
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla10g00714 353 PANTHER CPG BINDING PROTEIN 99 350 IPR045104 GO:0006355|GO:0042393
Cla10g00714 353 Pfam PHD-finger 300 349 IPR019787 -
Cla10g00714 353 Pfam Alfin 109 237 IPR021998 GO:0006355|GO:0042393
Cla10g00714 353 CDD PHD_AL_plant 300 349 IPR044104 -
Cla10g00714 353 MobiDBLite consensus disorder prediction 239 260 - -
Cla10g00714 353 MobiDBLite consensus disorder prediction 281 298 - -
Cla10g00714 353 ProSitePatterns Zinc finger PHD-type signature. 300 346 IPR019786 -
Cla10g00714 353 ProSiteProfiles Zinc finger PHD-type profile. 297 349 IPR019787 -
Cla10g00714 353 SUPERFAMILY FYVE/PHD zinc finger 288 350 IPR011011 -
Cla10g00714 353 MobiDBLite consensus disorder prediction 239 299 - -
Cla10g00714 353 SMART PHD_3 299 347 IPR001965 -
Cla10g00714 353 PANTHER PHD FINGER PROTEIN ALFIN-LIKE 7 99 350 - -
Cla10g00714 353 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 289 348 IPR013083 -
Cla10g00714 353 MobiDBLite consensus disorder prediction 261 280 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla08g00996 Cla-Chr8:22725908 Cla10g00714 Cla-Chr10:11292447 7.08E-91 dispersed
Cla09g00078 Cla-Chr9:768976 Cla10g00714 Cla-Chr10:11292447 1.03E-86 dispersed
Cla10g00714 Cla-Chr10:11292447 Cla10g02093 Cla-Chr10:36624060 2.38E-94 dispersed
Cla10g00714 Cla-Chr10:11292447 Cla07g00398 Cla-Chr7:4960689 4.40E-108 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
61857 PF12165 Alfin 5.20E-68 No_clan Cla TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla10g00714 - - csv:101212601 488.419