Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla10g00731 ATGGCAGTCTCACAAAAGAAGATTGAGATCCTCCTCTTGTCAACTAGGGCACACGCAAAACTAAGGAAGAAAATCGCTAGATGTGACCTGGGTGTTCACTCTACCATTTTTCAGCTGTCATTGTGCTGCATAGGAGTCTCATTGTTCAAGTTCCATCTTCCCAGCATTTATTTAGTCTTAGCAATGGTTCTTGTTGGTTCTTTGCAACTGTCCTATCATTTGGGACCGTGGAGAAACTATTTGCATGAAGAAAATCTTAAGTTTACCTCTCAGAGCTATAACATACGACTACTGAATGTAGCTAGTCCATCGTCTCTTTTATTCCAGAAGAACACTTGGAGGACTCATTTATTTAGCATGAAATACCCACCTAATTACATTGTGCCTTCTAGATGCAATGTACTCAGGTGCCAGTCGTCATTGATGACAAACCAACCGCTGGATCCCCCTGGGATGAAGGCTGCTATAGTGGCATTGACAAGGTTTTGTAATGTATTAGGTGCTTGTCCTCCTCCGGTGGTTAATTTGGTTCCTGCGGCTTGTATTATCATGTTTGCTGTATGGGGTCTTGGACCATTTTTGCATTATACGAGAAGCCTATTCCATAATGATAATAACTGGAAGAAAAGTCGGACATATAACATCATGACCTTGTATCTTCAACCATTACTGCTGTGGACTGGAGCAACACTTATTTGCAGAGCTTTAGATCCAGTAGTTTTACCTACAGAGTCCAGCCAAGTTGTGAAGCAACGAGTGTTGAACTTTGTTAGGTCATTGTCCACTGTGCTGGCCTTTGCATATTGCTTATCTAGCATGATTCAACAAGCACAGAAATTCTTCTCAGAGAGTACTGAATCCAGTGACGCGAGAAATATGGGCTTTCAATTTGCTTGGAAAGCTGTATACTCTGCCGTATGGGTTGCCGCTCTCTCATTGTTCATGGAGCTGTTGGGCTTTTCAACCCAAAAATGGCTTACAGCTGGAGGTCTTGGGACTGTATTGCTGACATTAGCTGGCCGTGAGATTTTCACCAACTTCCTCTCAAGTGTGATGATTCATGCAACTCGTCCTTTTGTTGTTAATGAGTGGATCCAAACGAAGATTGAGGGCTACGAAGTTTCTGGCACTGTTGAGCATGTAGGGTGGTGGTCGCCAACAATCATTAGAGGTGAAGATCGTGAAGCAGTTCACATACCAAACCATAAGTTCACCGTGAATGTCGTTAGAAATCTCAGTCAAAAAACTCACTGGCGGATTAAAACCCACCTTGCCATTAGCCATTTGGACGTCAACAAAATCAATAACATTGTTGCAGACATGCGGAAAGTCTTGGCGAAGAACCCTCAAGTTGAACAACAGAGATTGCATAGAAGAGTATTTTTGGAAAACGTGGATCCTGAAAATCAGGCACTTTTGATTTTGATATCGTGTTTTGTTAAGACTTCACATTTTGAAGAATACCTTTGTGTAAAGGAAGCTATAATTTTGGATCTTCTTAGAGTCATTAGACATCACCGGGCTCGACTTGCAACACCAATCCGCACAATGCAGAAGATGCATAGTGATTCAGACATGGAAAGCGTTCCATTTTCTGATTCAATATTTGGCCACCGTGGTGCGACTTTGAATCGCCGCATGCTGATGATTGAGCCCCCTTACAAAGTTTATGGAGAAGATAGAAAGCAAAGCCATAGCAGGACATCACGCACAACGGGAGAACAAAATGGTAAGCCCGTTGCACGGTCATCGGGTGACAGCAAGGCTGCCAAAGAGACAATGTCATCTGATAGAAAGACAGAAGTCAAGACTGGAGGAGATGCTGATACAAAAATGCATCCCAAAGTTTCGATGTCAACCTCTGAAGATAAATCAAGCAATGAATTGAAACATAAACCATCATCAAGGTCTGCTGCAAGTACCAGTACCTCTGATATGCCAGATGCCAAAACAACTAAATTAGATGCTGATAATTCAATGGAAGATTGCAGTCCCAAGCAATCCGAAAATAGCTTGGGAAGTAACAAGCAGAACTTCAAGCCTTCCCTTCCTGTTGTTTCCTTTCCGGAAGATGTTAAGAAACCAGGAGGAACTACTTCAGCAGCAGCTTCACAGCCAAGGATAGAAGGTGAGCAGACAACAGTTTCAAATCCATCGGTAACAAAGCCTGGCGTGGAAGAGAATATAATCCTTGGTGTTGCTTTGGATGGCTCCAAGAGAACACTTCCTATTGAGGACGAAGTACCTACCGCATCGGGAGCAAAAGATTTGGCTGCATGCAGGAATGGGAACAGTGCGAATGGAGCAACAACGGCAGATAAGAACATGAAACGTCAGTCTCCTTCTTCCCCTACCACATCTTCTAGTGAATAG 2373 43.07 MAVSQKKIEILLLSTRAHAKLRKKIARCDLGVHSTIFQLSLCCIGVSLFKFHLPSIYLVLAMVLVGSLQLSYHLGPWRNYLHEENLKFTSQSYNIRLLNVASPSSLLFQKNTWRTHLFSMKYPPNYIVPSRCNVLRCQSSLMTNQPLDPPGMKAAIVALTRFCNVLGACPPPVVNLVPAACIIMFAVWGLGPFLHYTRSLFHNDNNWKKSRTYNIMTLYLQPLLLWTGATLICRALDPVVLPTESSQVVKQRVLNFVRSLSTVLAFAYCLSSMIQQAQKFFSESTESSDARNMGFQFAWKAVYSAVWVAALSLFMELLGFSTQKWLTAGGLGTVLLTLAGREIFTNFLSSVMIHATRPFVVNEWIQTKIEGYEVSGTVEHVGWWSPTIIRGEDREAVHIPNHKFTVNVVRNLSQKTHWRIKTHLAISHLDVNKINNIVADMRKVLAKNPQVEQQRLHRRVFLENVDPENQALLILISCFVKTSHFEEYLCVKEAIILDLLRVIRHHRARLATPIRTMQKMHSDSDMESVPFSDSIFGHRGATLNRRMLMIEPPYKVYGEDRKQSHSRTSRTTGEQNGKPVARSSGDSKAAKETMSSDRKTEVKTGGDADTKMHPKVSMSTSEDKSSNELKHKPSSRSAASTSTSDMPDAKTTKLDADNSMEDCSPKQSENSLGSNKQNFKPSLPVVSFPEDVKKPGGTTSAAASQPRIEGEQTTVSNPSVTKPGVEENIILGVALDGSKRTLPIEDEVPTASGAKDLAACRNGNSANGATTADKNMKRQSPSSPTTSSSE 790
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 11724317 11732126 - ClCG10G007730.1 Cla10g00731 282390

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla10g00731 790 MobiDBLite consensus disorder prediction 698 723 - -
Cla10g00731 790 Gene3D - 254 357 - -
Cla10g00731 790 PANTHER OW CONDUCTANCE MECHANOSENSITIVE CHANNEL 62 780 IPR045042 -
Cla10g00731 790 MobiDBLite consensus disorder prediction 555 723 - -
Cla10g00731 790 MobiDBLite consensus disorder prediction 751 790 - -
Cla10g00731 790 Gene3D - 359 414 IPR023408 -
Cla10g00731 790 PANTHER MECHANOSENSITIVE ION CHANNEL PROTEIN 2, CHLOROPLASTIC 62 780 - -
Cla10g00731 790 MobiDBLite consensus disorder prediction 663 682 - -
Cla10g00731 790 SUPERFAMILY Sm-like ribonucleoproteins 343 413 IPR010920 -
Cla10g00731 790 MobiDBLite consensus disorder prediction 763 790 - -
Cla10g00731 790 MobiDBLite consensus disorder prediction 632 649 - -
Cla10g00731 790 MobiDBLite consensus disorder prediction 591 610 - -
Cla10g00731 790 Pfam Mechanosensitive ion channel 301 507 IPR006685 GO:0016020|GO:0055085
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla10g00731 K22047 MSL1_2_3; mechanosensitive ion channel protein 1/2/3 - csv:101217250 1275.38
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla05g00153 Cla-Chr5:1423111 Cla10g00731 Cla-Chr10:11724317 2.14E-12 dispersed
Cla08g01164 Cla-Chr8:24475189 Cla10g00731 Cla-Chr10:11724317 0 dispersed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cla05g00153 . 134 527 Mechanosensitive Ion Channel Family AT4G00290 66.5 6.7e-153 537.7
Cla08g01164 . 10 651 Mechanosensitive Ion Channel Family AT5G10490 58.5 1.3e-196 683.3
Cla10g00731 . 116 789 Mechanosensitive Ion Channel Family AT5G10490 55.4 4.9e-191 664.8
Cla08g01164 . 10 631 Mechanosensitive Ion Channel Family AT1G58200 58.0 2.9e-199 692.2
Cla10g00731 . 104 566 Mechanosensitive Ion Channel Family AT1G58200 65.0 2.5e-171 599.4
Cla02g01085 . 43 928 Mechanosensitive Ion Channel Family AT1G53470 54.8 3.2e-259 891.7
Cla02g00401 . 91 947 Mechanosensitive Ion Channel Family AT1G53470 51.2 2.4e-238 822.4
Cla02g01085 . 43 926 Mechanosensitive Ion Channel Family AT3G14810 53.3 1.1e-245 846.7
Cla02g01085 . 47 928 Mechanosensitive Ion Channel Family AT1G78610 58.4 1.2e-279 959.5
Cla02g00401 . 59 952 Mechanosensitive Ion Channel Family AT1G78610 55.8 1.1e-269 926.4
Cla02g01085 . 226 928 Mechanosensitive Ion Channel Family AT2G17000 61.6 4.3e-237 818.1
Cla02g00401 . 266 934 Mechanosensitive Ion Channel Family AT2G17000 58.7 1.1e-221 766.9
Cla02g01085 . 1 675 Mechanosensitive Ion Channel Family AT2G17010 50.3 4.3e-163 572.0
Cla05g01622 . 62 723 Mechanosensitive Ion Channel Family AT5G12080 57.8 1.7e-200 696.4
Cla03g01465 . 110 822 Mechanosensitive Ion Channel Family AT5G12080 52.2 2.7e-195 679.1
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001552 2 6 1 1 1 2 3 2 2 2 2 2 3 2 2 3 2 3 3 2 2 2 2 3 2 2 2 6 2 2 71
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla10g00731 Cla_Chr10 FPKM 3.138421 2.585382 0.870626 0.465566 7.445726 6.399906 7.344821 0.681743 0.995892 0.688706