Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla10g00731 ATGGCAGTCTCACAAAAGAAGATTGAGATCCTCCTCTTGTCAACTAGGGCACACGCAAAACTAAGGAAGAAAATCGCTAGATGTGACCTGGGTGTTCACTCTACCATTTTTCAGCTGTCATTGTGCTGCATAGGAGTCTCATTGTTCAAGTTCCATCTTCCCAGCATTTATTTAGTCTTAGCAATGGTTCTTGTTGGTTCTTTGCAACTGTCCTATCATTTGGGACCGTGGAGAAACTATTTGCATGAAGAAAATCTTAAGTTTACCTCTCAGAGCTATAACATACGACTACTGAATGTAGCTAGTCCATCGTCTCTTTTATTCCAGAAGAACACTTGGAGGACTCATTTATTTAGCATGAAATACCCACCTAATTACATTGTGCCTTCTAGATGCAATGTACTCAGGTGCCAGTCGTCATTGATGACAAACCAACCGCTGGATCCCCCTGGGATGAAGGCTGCTATAGTGGCATTGACAAGGTTTTGTAATGTATTAGGTGCTTGTCCTCCTCCGGTGGTTAATTTGGTTCCTGCGGCTTGTATTATCATGTTTGCTGTATGGGGTCTTGGACCATTTTTGCATTATACGAGAAGCCTATTCCATAATGATAATAACTGGAAGAAAAGTCGGACATATAACATCATGACCTTGTATCTTCAACCATTACTGCTGTGGACTGGAGCAACACTTATTTGCAGAGCTTTAGATCCAGTAGTTTTACCTACAGAGTCCAGCCAAGTTGTGAAGCAACGAGTGTTGAACTTTGTTAGGTCATTGTCCACTGTGCTGGCCTTTGCATATTGCTTATCTAGCATGATTCAACAAGCACAGAAATTCTTCTCAGAGAGTACTGAATCCAGTGACGCGAGAAATATGGGCTTTCAATTTGCTTGGAAAGCTGTATACTCTGCCGTATGGGTTGCCGCTCTCTCATTGTTCATGGAGCTGTTGGGCTTTTCAACCCAAAAATGGCTTACAGCTGGAGGTCTTGGGACTGTATTGCTGACATTAGCTGGCCGTGAGATTTTCACCAACTTCCTCTCAAGTGTGATGATTCATGCAACTCGTCCTTTTGTTGTTAATGAGTGGATCCAAACGAAGATTGAGGGCTACGAAGTTTCTGGCACTGTTGAGCATGTAGGGTGGTGGTCGCCAACAATCATTAGAGGTGAAGATCGTGAAGCAGTTCACATACCAAACCATAAGTTCACCGTGAATGTCGTTAGAAATCTCAGTCAAAAAACTCACTGGCGGATTAAAACCCACCTTGCCATTAGCCATTTGGACGTCAACAAAATCAATAACATTGTTGCAGACATGCGGAAAGTCTTGGCGAAGAACCCTCAAGTTGAACAACAGAGATTGCATAGAAGAGTATTTTTGGAAAACGTGGATCCTGAAAATCAGGCACTTTTGATTTTGATATCGTGTTTTGTTAAGACTTCACATTTTGAAGAATACCTTTGTGTAAAGGAAGCTATAATTTTGGATCTTCTTAGAGTCATTAGACATCACCGGGCTCGACTTGCAACACCAATCCGCACAATGCAGAAGATGCATAGTGATTCAGACATGGAAAGCGTTCCATTTTCTGATTCAATATTTGGCCACCGTGGTGCGACTTTGAATCGCCGCATGCTGATGATTGAGCCCCCTTACAAAGTTTATGGAGAAGATAGAAAGCAAAGCCATAGCAGGACATCACGCACAACGGGAGAACAAAATGGTAAGCCCGTTGCACGGTCATCGGGTGACAGCAAGGCTGCCAAAGAGACAATGTCATCTGATAGAAAGACAGAAGTCAAGACTGGAGGAGATGCTGATACAAAAATGCATCCCAAAGTTTCGATGTCAACCTCTGAAGATAAATCAAGCAATGAATTGAAACATAAACCATCATCAAGGTCTGCTGCAAGTACCAGTACCTCTGATATGCCAGATGCCAAAACAACTAAATTAGATGCTGATAATTCAATGGAAGATTGCAGTCCCAAGCAATCCGAAAATAGCTTGGGAAGTAACAAGCAGAACTTCAAGCCTTCCCTTCCTGTTGTTTCCTTTCCGGAAGATGTTAAGAAACCAGGAGGAACTACTTCAGCAGCAGCTTCACAGCCAAGGATAGAAGGTGAGCAGACAACAGTTTCAAATCCATCGGTAACAAAGCCTGGCGTGGAAGAGAATATAATCCTTGGTGTTGCTTTGGATGGCTCCAAGAGAACACTTCCTATTGAGGACGAAGTACCTACCGCATCGGGAGCAAAAGATTTGGCTGCATGCAGGAATGGGAACAGTGCGAATGGAGCAACAACGGCAGATAAGAACATGAAACGTCAGTCTCCTTCTTCCCCTACCACATCTTCTAGTGAATAG 2373 43.07 MAVSQKKIEILLLSTRAHAKLRKKIARCDLGVHSTIFQLSLCCIGVSLFKFHLPSIYLVLAMVLVGSLQLSYHLGPWRNYLHEENLKFTSQSYNIRLLNVASPSSLLFQKNTWRTHLFSMKYPPNYIVPSRCNVLRCQSSLMTNQPLDPPGMKAAIVALTRFCNVLGACPPPVVNLVPAACIIMFAVWGLGPFLHYTRSLFHNDNNWKKSRTYNIMTLYLQPLLLWTGATLICRALDPVVLPTESSQVVKQRVLNFVRSLSTVLAFAYCLSSMIQQAQKFFSESTESSDARNMGFQFAWKAVYSAVWVAALSLFMELLGFSTQKWLTAGGLGTVLLTLAGREIFTNFLSSVMIHATRPFVVNEWIQTKIEGYEVSGTVEHVGWWSPTIIRGEDREAVHIPNHKFTVNVVRNLSQKTHWRIKTHLAISHLDVNKINNIVADMRKVLAKNPQVEQQRLHRRVFLENVDPENQALLILISCFVKTSHFEEYLCVKEAIILDLLRVIRHHRARLATPIRTMQKMHSDSDMESVPFSDSIFGHRGATLNRRMLMIEPPYKVYGEDRKQSHSRTSRTTGEQNGKPVARSSGDSKAAKETMSSDRKTEVKTGGDADTKMHPKVSMSTSEDKSSNELKHKPSSRSAASTSTSDMPDAKTTKLDADNSMEDCSPKQSENSLGSNKQNFKPSLPVVSFPEDVKKPGGTTSAAASQPRIEGEQTTVSNPSVTKPGVEENIILGVALDGSKRTLPIEDEVPTASGAKDLAACRNGNSANGATTADKNMKRQSPSSPTTSSSE 790
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 11724317 11732126 - ClCG10G007730.1 Cla10g00731 282390
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla10g00731 790 MobiDBLite consensus disorder prediction 698 723 - -
Cla10g00731 790 Gene3D - 254 357 - -
Cla10g00731 790 PANTHER OW CONDUCTANCE MECHANOSENSITIVE CHANNEL 62 780 IPR045042 -
Cla10g00731 790 MobiDBLite consensus disorder prediction 555 723 - -
Cla10g00731 790 MobiDBLite consensus disorder prediction 751 790 - -
Cla10g00731 790 Gene3D - 359 414 IPR023408 -
Cla10g00731 790 PANTHER MECHANOSENSITIVE ION CHANNEL PROTEIN 2, CHLOROPLASTIC 62 780 - -
Cla10g00731 790 MobiDBLite consensus disorder prediction 663 682 - -
Cla10g00731 790 SUPERFAMILY Sm-like ribonucleoproteins 343 413 IPR010920 -
Cla10g00731 790 MobiDBLite consensus disorder prediction 763 790 - -
Cla10g00731 790 MobiDBLite consensus disorder prediction 632 649 - -
Cla10g00731 790 MobiDBLite consensus disorder prediction 591 610 - -
Cla10g00731 790 Pfam Mechanosensitive ion channel 301 507 IPR006685 GO:0016020|GO:0055085
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla05g00153 Cla-Chr5:1423111 Cla10g00731 Cla-Chr10:11724317 2.14E-12 dispersed
Cla08g01164 Cla-Chr8:24475189 Cla10g00731 Cla-Chr10:11724317 0 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla10g00731 K22047 - csv:101217250 1275.38