Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla10g00737 ATGGCTCCTGCCACTAACTGGCTCTCCTTCTCTCTTTCCCCCATTGAAATGCTTCGCTCCACTGATTCTCCCTTTCTTCCTTATGATTCTTCCTCCACTCCCTCCCCTCACTATCTCCTCGACAATTTCTACTCTCATAATGATGAAAATAACGATGCTGTGAAAGAAGACCAAACAACGACACCCACCATTTTTAGTACCTTCCTTCATCCACAAACCCATCATCACCACCAACCCAAGCTTGAAGATTTCCTGGGCGATTCCTCTCCCATGGTGCGATATTCCGACAGCCAAACCGACACTCAAGATTCCTCTTTAACTCATATTTACGACCATGCTTCCGCCCCCCCTTACTTCGCCGACCAACAAGATCTCAAAACTATTGCTGCTTTTCAAGCTTTTTCAGCCAACTCTGGCTCTGAAGTTGATGATTCTGCTTCTATTGCTAGAACCCATATCCCCTCTGCTCATTCTATTGAATCTTCTCTCACTAATAATGAGTTGCCCTCTTTCTCTAACTGCCCTACCGGTGCTCTCTCACTCGCTGTCGCTCACTCCTCCGACACCGCCACTGCTGGGCCTATTGTGGCTGTAGATTCTGAGTCCTCTAAGAAAATTGCTGATACTTTTGGCCAGAGAACTTCCATTTACAGAGGAGTCACTAGGCACAGATGGACGGGTAGATACGAAGCGCATCTATGGGATAACAGCTGTAGAAGAGAGGGTCAGGCTAGGAAAGGACGTCAAGCTGAGCTGAGATTCTCTTTTTTGCTTTTTTTGCATAAAATCTGCGGTGCTGATTTTCCCGTTCACATTCACATTCCAACCCTTTGTTCTTCAGTTTACTTGGGTGGGTATGATAAGGAGGAAAAAGCAGCTAGGGCTTATGATTTGGCGGCTTTGAAGTACTGGGGTCCCACAGCAACCACCAATTTTCCTGTTTCAAATTATGCCAAGGAATTGGAAGAAATGAAACATGTCACCAAACAAGAGTTTATCGCTTCCTTGCGAAGAAAGAGCAGCGGTTTTTCGCGAGGTGCCTCTATTTATAGAGGTGTAACAAGGCATCATCAGCAGGGTCGATGGCAGGCAAGAATTGGTCGTGTTGCTGGCAACAAGGACTTGTATCTCGGGACGTTTGCTACTGAAGAGGAAGCAGCTGAGGCTTACGATATAGCAGCAATCAAGTTTAGAGGTTTGAATGCCGTGACAAACTTTGAGATGAGTCGATATGATGTGGAAGCTATTGCAAAGAGTGCGCTGCCTATCGGGGGAGCAGCAAAGAGGCTGAAGCTTTGTCTGGAATCCGATCAGAAGCCGATTCCAAATCACGATCAAGCAACCCAATGCAGCAGTGGAAGCAACAATATCAACTTCGGCACCACTGTGCAAGCTGTGCCACCAATCCCTTGTGGTATTCCATACGACACTGCAGCTGTGCTGTATCACCATAATTACTTCCATCATCTTCAACCTAATGCCATCGGTTCGTCGGAGTCGACCAGCCCAGGCATTGCAGGACTGGGGACTGTGGCACCTCAAGCAGCCGAGTTTTTTGTTTGGCCTCGCCAATCGTATTAA 1581 47.12 MAPATNWLSFSLSPIEMLRSTDSPFLPYDSSSTPSPHYLLDNFYSHNDENNDAVKEDQTTTPTIFSTFLHPQTHHHHQPKLEDFLGDSSPMVRYSDSQTDTQDSSLTHIYDHASAPPYFADQQDLKTIAAFQAFSANSGSEVDDSASIARTHIPSAHSIESSLTNNELPSFSNCPTGALSLAVAHSSDTATAGPIVAVDSESSKKIADTFGQRTSIYRGVTRHRWTGRYEAHLWDNSCRREGQARKGRQAELRFSFLLFLHKICGADFPVHIHIPTLCSSVYLGGYDKEEKAARAYDLAALKYWGPTATTNFPVSNYAKELEEMKHVTKQEFIASLRRKSSGFSRGASIYRGVTRHHQQGRWQARIGRVAGNKDLYLGTFATEEEAAEAYDIAAIKFRGLNAVTNFEMSRYDVEAIAKSALPIGGAAKRLKLCLESDQKPIPNHDQATQCSSGSNNINFGTTVQAVPPIPCGIPYDTAAVLYHHNYFHHLQPNAIGSSESTSPGIAGLGTVAPQAAEFFVWPRQSY 526
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 12068184 12072184 - ClCG10G007780.1 Cla10g00737 282396
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla10g00737 526 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR AIL6 284 505 - -
Cla10g00737 526 CDD AP2 215 315 IPR001471 GO:0003700|GO:0006355
Cla10g00737 526 CDD AP2 348 409 IPR001471 GO:0003700|GO:0006355
Cla10g00737 526 SUPERFAMILY DNA-binding domain 278 315 IPR016177 GO:0003677
Cla10g00737 526 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 5 250 - -
Cla10g00737 526 PRINTS Ethylene responsive element binding protein signature 217 228 IPR001471 GO:0003700|GO:0006355
Cla10g00737 526 PRINTS Ethylene responsive element binding protein signature 295 315 IPR001471 GO:0003700|GO:0006355
Cla10g00737 526 ProSiteProfiles AP2/ERF domain profile. 216 313 IPR001471 GO:0003700|GO:0006355
Cla10g00737 526 Gene3D AP2/ERF domain 349 409 IPR036955 GO:0003700|GO:0006355
Cla10g00737 526 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 284 505 - -
Cla10g00737 526 Pfam AP2 domain 349 399 IPR001471 GO:0003700|GO:0006355
Cla10g00737 526 Gene3D AP2/ERF domain 216 315 IPR036955 GO:0003700|GO:0006355
Cla10g00737 526 SUPERFAMILY DNA-binding domain 348 409 IPR016177 GO:0003677
Cla10g00737 526 SMART rav1_2 349 413 IPR001471 GO:0003700|GO:0006355
Cla10g00737 526 SMART rav1_2 216 319 IPR001471 GO:0003700|GO:0006355
Cla10g00737 526 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR AIL6 5 250 - -
Cla10g00737 526 ProSiteProfiles AP2/ERF domain profile. 349 407 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla10g00737 Cla-Chr10:12068184 Cla11g00873 Cla-Chr11:14128578 2.02E-123 dispersed
Cla10g00737 Cla-Chr10:12068184 Cla08g01641 Cla-Chr8:29034235 3.43E-104 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
61859 PF00847 AP2 2.10E-10 CL0081 Cla TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla10g00737 K09285 - csv:101217714 847.04