Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla10g00746 ATGTCGAGCTACCTTCTTCAACGCATAGCTATCAGTGACAACTCCTGTCAGGCCTCGGCCATACTCTCAACGCATAACCACACCAACGCATGGCCACACTTAGCTACTTTTGCTCCCACACAACTCGGCCACCTTTCTCTACTTATTGCCCATCTCATAGTTTTCTTCTTAACTTGCCTTCTCCCAATGCTAGCCCTAGTAAAGATCAACGACATCTGTATGGATGATGATGACTTTTCTAAGGCAGGCAACAACGAATGGCATGGGAGTGGCTCTGGCGAGCGGACGAGGTGCATACTTCCTGGTCCTCTCGTACTAGGGAAAGGTCCTCTCAATGCTCTAATGCCCACACCGGATATGGACCGAACTGTCTCACGACGTTCTGAACCCAACCCATGTACCGCTTTAATGGGCGAACAACCCAACTCTTGGAACATACTACAGCCCCAGGTGGCGAAGAGCCGACATCGAGGTGCCAAACCTTCCCGTCGATGTGAGCTCTTGGGGAAGATCAACTTGTTATCCCTAGAGGCTTTCGTTTCCCCCTTCTTCTTCACAAATCTCTCCGTTTCTCACACGATCTGGTGTCTCGCTCTCTCACTCGGAGATTTTCTGCGTTTCTCTGCCCCTCTCCAGTTCTTGCAGTGGCGCTTCTCTCTTCGGTCCGTTCGATTTGCATTGGAACTCGTAACTGAAATGGCTGGGGGAGGAATGATTCGGCAGTTGCTGAGGAAATTTCCATCTCAATCTTCAAATCAGGAAGCTGGCTTTGCTGGGATGAACTCCTTTAGAAGGCTGGCTCTTCTTGGAGCAGGCATTTCAGGGTTTTTCAGTTTTGCAACTTTGGCATCTGCTGATGAGGCAGAACATGGTTTGGAGTGTCCAAGCTACCCGTGGCCTCACCAGGGCATTTTGAGTTCATATGATCATGCTTCGATTCGTCGTGGTCATCAGGTTTACCAACAAGTTTGTGCATCTTGTCATTCCATGTCTTTAATATCATACCGTGATTTGGTTGGTGTTGCATATACTGAAGAGGAGACAAAAGCTATGGCTGCTGAAATTGAGGTAGTTGATGGACCCAATGATGAGGGTGAGATGTTCACTCGTCCAGGTAAACTCAGTGACCGGTTTCCTCAACCATATGCAAATGAACAAGCTGCTAGATTTGCTAATGGTGGAGCATACCCTCCAGATCTGAGCCTTATCACAAAAGCTCGTCATAATGGTCAGAATTATGTATTTGCCCTTCTTACTGGTTATCGTGATCCACCTGCTGGTGTTTCGATCCGAGAGGGTCTGCACTATAACCCTTATTTCCCTGGGGGAGCAATTGCGATGCCTAAGATGCTTAATGATGGAGCTGTTGAGTACGAAGATGGTACCCCTGCCACAGAAGCACAGATGGGGAAAGATGTTGTATCGTTCTTGTCATGGGCTGCTGAACCAGAAATGGAAGAAAGGAAACTGATGGGATTCAAATGGATCTTTGTGCTCTCTCTGGCTCTACTTCAGGCTGCATATTACCGGCGATTGAAGTGGTCGGTTTTGAAGTCCCGCAAGCTGGTTCTTGATGTAGTGAATTAG 1587 48.02 MSSYLLQRIAISDNSCQASAILSTHNHTNAWPHLATFAPTQLGHLSLLIAHLIVFFLTCLLPMLALVKINDICMDDDDFSKAGNNEWHGSGSGERTRCILPGPLVLGKGPLNALMPTPDMDRTVSRRSEPNPCTALMGEQPNSWNILQPQVAKSRHRGAKPSRRCELLGKINLLSLEAFVSPFFFTNLSVSHTIWCLALSLGDFLRFSAPLQFLQWRFSLRSVRFALELVTEMAGGGMIRQLLRKFPSQSSNQEAGFAGMNSFRRLALLGAGISGFFSFATLASADEAEHGLECPSYPWPHQGILSSYDHASIRRGHQVYQQVCASCHSMSLISYRDLVGVAYTEEETKAMAAEIEVVDGPNDEGEMFTRPGKLSDRFPQPYANEQAARFANGGAYPPDLSLITKARHNGQNYVFALLTGYRDPPAGVSIREGLHYNPYFPGGAIAMPKMLNDGAVEYEDGTPATEAQMGKDVVSFLSWAAEPEMEERKLMGFKWIFVLSLALLQAAYYRRLKWSVLKSRKLVLDVVN 528
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 12682489 12690298 + ClCG10G007870.2 Cla10g00746 282405
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla10g00746 528 AntiFam Antisense to 23S rRNA 96 175 - -
Cla10g00746 528 PRINTS Cytochrome C1 signature 483 498 IPR002326 GO:0009055|GO:0020037
Cla10g00746 528 PRINTS Cytochrome C1 signature 297 316 IPR002326 GO:0009055|GO:0020037
Cla10g00746 528 PRINTS Cytochrome C1 signature 362 382 IPR002326 GO:0009055|GO:0020037
Cla10g00746 528 PRINTS Cytochrome C1 signature 464 483 IPR002326 GO:0009055|GO:0020037
Cla10g00746 528 PRINTS Cytochrome C1 signature 433 444 IPR002326 GO:0009055|GO:0020037
Cla10g00746 528 PRINTS Cytochrome C1 signature 444 463 IPR002326 GO:0009055|GO:0020037
Cla10g00746 528 PRINTS Cytochrome C1 signature 395 419 IPR002326 GO:0009055|GO:0020037
Cla10g00746 528 PRINTS Cytochrome C1 signature 317 336 IPR002326 GO:0009055|GO:0020037
Cla10g00746 528 Gene3D - 288 483 IPR036909 GO:0009055|GO:0020037
Cla10g00746 528 PANTHER CYTOCHROME C1 253 528 IPR002326 GO:0009055|GO:0020037
Cla10g00746 528 ProSiteProfiles Cytochrome c family profile. 311 418 IPR009056 GO:0009055|GO:0020037
Cla10g00746 528 Gene3D - 484 527 - -
Cla10g00746 528 SUPERFAMILY Cytochrome c1 subunit of cytochrome bc1 complex (Ubiquinol-cytochrome c reductase), transmembrane anchor 483 527 IPR021157 -
Cla10g00746 528 Pfam Cytochrome C1 family 299 515 IPR002326 GO:0009055|GO:0020037
Cla10g00746 528 PANTHER CYTOCHROME C1-1, HEME PROTEIN, MITOCHONDRIAL 253 528 - -
Cla10g00746 528 SUPERFAMILY Cytochrome c 292 482 IPR036909 GO:0009055|GO:0020037
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla07g00910 Cla-Chr7:25136377 Cla10g00746 Cla-Chr10:12682489 1.22E-15 dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla10g00746 K00413 - csv:101215010 583.948