Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla10g00774 ATGCCATTTCTGAACCTTCCTCCATCTTCTCCCCACCTTCTTTTCTTCATCATTTACTTCTTCTTCTTCTTTCAGTTCTCTGTTTTCGCTCTCTTCTCCAACCACGATTACGATATTCTGATACGAATTAAAAACACCCATTTCGATGATCCCAAAGGCTGTTTGAACAATTGGGTTCCCAACCAAGCTCACAACCCCTGTAATTGGACTGGAATCACCTGCGATTCCACTAATTCCTCTGTTCTTTCCATCGATCTCAGTGATTCCGGCGTCTCCGGCGGATTTCCCTTCGAGTTTTGCCGGATTTCGTCTCTGAAATCCCTTTCTATCTCCAACTGCAGCGTCAATGGAACTTTACTCTCTCCTTCCTTCTCTCTCTGTTCTCACTTGCAACTCCTTAATCTTTCCTCTAACTTACTCGTCGGGAACTTGCCGGAGTTTTCCGCTGGTTTCACACAACTGAAAATTCTCGATCTCTCCGCCAACAATTTCACCGGTGATATTCCTCAAAGCTTCGGACAGTTACCGGCGCTGAGAGTGCTCCGTTTGTCGCAGAATCTGCTCAACGGCTCATTACCTTCTTTTCTGGGAAAACTCAGTGAGCTAACTGAAATGGCCATCGCTTATAATAATTTCAAACCCAATCGGTTACCACCTGAAATCGGAAACCTGAAGAAACTTGTAAACCTGTTTTTACCGTTTTCGAATTTCGTTGGACCCATTCCTGATTCCATCGGCAACCTTACTTTGCTTACTAATCTCGATTTGTCTAGCAATTCCATTTCGGGTCCGATCCCGGATTCAATCGGCGGACTAAGGAGCATAAAGAAGATTCAACTCTATAACAATCGACTCTCCGGTGAGTTGCCGGAGATCATCGGAAATTTGACTACTCTGTTTTCGCTGGACATCTCGCAGAATAGTCTCACCGGGAAACTGCCGGAGAAAATTGCTGCTCTCCCTCTTCAATATCTGCATCTCAGTGACAATTTCCTCGACGGCGAGGTCCCGGAGAGCTTAGCTTCTAACCCAAATCTTCTCAATTTGAAATTGTTTAACAATAGCTTTTACGGCGAACTTCCCCGGAATTTGGGTCTGAATACTTATTTGAATGAGATTGATGTCTCTACCAACAATTTTGTGGGTGAAATTCCGAAATTTCTCTGCCATGGAAACCAACTTCAGAAAATCGTTTTATTCAACAACCGTCTCTCTGGAAATTTCCCAGAATCGTACGGTAGTTGCGATTCTCTGTATTATGTCAGAATTGAGAACAATCAACTTTCCGGGAAGGTACCGGACTCGTTCTGGAATCTCTCTAAGCTTACTAATATTCTGCTGGCGGAAAATCGATTTCAGGGCTCCATTCCTCCGGCGATAAGTGGCGTTCGTTTTCTCGAAGATTTGTTGATTTCCGGTAACAACTTCTCCGGCCAGTTACCGAAGGAGATTTGCAAATTGCAAGAGCTCGTCCGGTTAGACGTCAGCAGGAATAAATTTTCCGGCGGAGTTCCTTCCTGTATAACAGAGTTGCAGCATCTTCAGAAGCTCGACATGGAAGAAAACATGTTCACCGGGGAAATACCCAATTCGGTTTACACATGGAAAGAACTAACCGAGTTGAATCTGTCGCACAATCAATTCATCGGTGAGATTCCGCCTCAACTCGGCGATTTACCAGTTCTAAAGTACTTGGATCTCTCTGCAAATTCACTCTCCGGCAAAATCCCCGAGGAATTGACGAAGCTTAAACTGGGTCAGTTCAATTTCTCCAACAACAAATTAACCGGAAAAGTTCCTTCCGGCTTCGACAACGAACTATTTGTCAGTAGCTTAATGGGTAATCCGGGTCTGTGTAGCCCGGATTTGAAGCCGCTGAACCGGTGCCCCAAACCCAAATCCATAAGTTTTTATGTTGTCATTGTTTTGTCGCTTATCGCTTTCGTTCTCGTCGGCTCTCTCATCTGGGTAATCAAATTCAAGATGAATCTTTTCAAGAAATCGAAATCCCCATGGACGGTGACCAAGTTTCAACGTGTCGGGTTCGATGAAGAAGATGTAATTCCTCATCTAACCAAAGCAAATGTTATAGGGTCAGGCGGGTCAGGTACTGTCTTCAAGGTTGATCTAAAAATGGGTCAGACCATCGCAGTGAAGAACCTATGGGGTGGCCACAATAAATTGGATACAGAATTGGTTTTCCAGTCTGAAGTTGAGACATTGGGTCGGATCCGGCATGCCAATATTGTGAAGTTGCTCTTAAGTTGTAGCAATGGCGAAGGAAGTAGGATTCTTGTGTACGAGTACATGGAAAATGGTAGTTTGGGAGATGTCCTACACGAACACAAATCCGAAGCTTTGTCTGATTGGTCAAAACGATACAACATCGCCCTCGGAGCAGCCCAAGGATTAGCTTACTTGCACCATGACTGCGTCCCTCCGATAATCCATCGCGATGTGAAGAGTAACAACATTCTCTTGGATGGAGAATTTCAACCTCGGGTGGCTGACTTCGGTTTGGCAAAGTCAATGCAACGACAGGCAGAAGCAAATGATGGCAATGTCATGTCTCGCATTGCTGGCTCCTACGGTTACATTGCCCCTGAGTATGGATATACAATGAAGGTGACAGAGAAGAGCGATGTGTATAGCTTTGGAGTGGTGTTGATGGAGCTAGTGACAGGGAAGCGACCGAACGATGCGTGTTTTAGGGAGAATGAAGATATTGTGAAATGGGTGACAAAGGCTGCTTTGTCCGAGGGAAAAGAAGAGAAAGGGTTGAGTTTGGATGAGATTATTGATGAAAAGTTGGATCCAAGGACATGTGAAGTAGAAGAGATTGTCAAGATTTTGGATGTGGCAGTGCTTTGTACTTCTGCTTTGCCTCTCAACAGACCATCCATGAGGAGAGTGGTTGAGCTCATAAGGGACACCAAATTGCCTCATTCCAAGTCATGA 2958 44.76 MPFLNLPPSSPHLLFFIIYFFFFFQFSVFALFSNHDYDILIRIKNTHFDDPKGCLNNWVPNQAHNPCNWTGITCDSTNSSVLSIDLSDSGVSGGFPFEFCRISSLKSLSISNCSVNGTLLSPSFSLCSHLQLLNLSSNLLVGNLPEFSAGFTQLKILDLSANNFTGDIPQSFGQLPALRVLRLSQNLLNGSLPSFLGKLSELTEMAIAYNNFKPNRLPPEIGNLKKLVNLFLPFSNFVGPIPDSIGNLTLLTNLDLSSNSISGPIPDSIGGLRSIKKIQLYNNRLSGELPEIIGNLTTLFSLDISQNSLTGKLPEKIAALPLQYLHLSDNFLDGEVPESLASNPNLLNLKLFNNSFYGELPRNLGLNTYLNEIDVSTNNFVGEIPKFLCHGNQLQKIVLFNNRLSGNFPESYGSCDSLYYVRIENNQLSGKVPDSFWNLSKLTNILLAENRFQGSIPPAISGVRFLEDLLISGNNFSGQLPKEICKLQELVRLDVSRNKFSGGVPSCITELQHLQKLDMEENMFTGEIPNSVYTWKELTELNLSHNQFIGEIPPQLGDLPVLKYLDLSANSLSGKIPEELTKLKLGQFNFSNNKLTGKVPSGFDNELFVSSLMGNPGLCSPDLKPLNRCPKPKSISFYVVIVLSLIAFVLVGSLIWVIKFKMNLFKKSKSPWTVTKFQRVGFDEEDVIPHLTKANVIGSGGSGTVFKVDLKMGQTIAVKNLWGGHNKLDTELVFQSEVETLGRIRHANIVKLLLSCSNGEGSRILVYEYMENGSLGDVLHEHKSEALSDWSKRYNIALGAAQGLAYLHHDCVPPIIHRDVKSNNILLDGEFQPRVADFGLAKSMQRQAEANDGNVMSRIAGSYGYIAPEYGYTMKVTEKSDVYSFGVVLMELVTGKRPNDACFRENEDIVKWVTKAALSEGKEEKGLSLDEIIDEKLDPRTCEVEEIVKILDVAVLCTSALPLNRPSMRRVVELIRDTKLPHSKS 985
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 14594346 14597386 - ClCG10G008090.1 Cla10g00774 282433
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla10g00774 985 Gene3D Phosphorylase Kinase; domain 1 666 769 - -
Cla10g00774 985 Gene3D Ribonuclease Inhibitor 216 320 IPR032675 -
Cla10g00774 985 ProSiteProfiles Leucine-rich repeat profile. 537 560 IPR001611 GO:0005515
Cla10g00774 985 SUPERFAMILY L domain-like 370 625 - -
Cla10g00774 985 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE FAMILY PROTEIN-RELATED 14 980 - -
Cla10g00774 985 SMART serkin_6 691 975 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cla10g00774 985 SUPERFAMILY Protein kinase-like (PK-like) 684 974 IPR011009 -
Cla10g00774 985 Pfam Leucine rich repeat N-terminal domain 34 75 IPR013210 -
Cla10g00774 985 Gene3D Ribonuclease Inhibitor 33 215 IPR032675 -
Cla10g00774 985 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE HSL2 14 980 - -
Cla10g00774 985 SUPERFAMILY RNI-like 79 389 - -
Cla10g00774 985 Pfam Leucine rich repeat 153 212 IPR001611 GO:0005515
Cla10g00774 985 Gene3D Ribonuclease Inhibitor 321 636 IPR032675 -
Cla10g00774 985 Pfam Protein kinase domain 693 902 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cla10g00774 985 Gene3D Transferase(Phosphotransferase) domain 1 770 984 - -
Cla10g00774 985 ProSiteProfiles Protein kinase domain profile. 691 980 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cla10g00774 985 ProSitePatterns Serine/Threonine protein kinases active-site signature. 815 827 IPR008271 GO:0004672|GO:0006468
Cla10g00774 985 ProSitePatterns Protein kinases ATP-binding region signature. 697 719 IPR017441 GO:0005524
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla02g00229 Cla-Chr2:2383335 Cla10g00774 Cla-Chr10:14594346 0 dispersed
Cla03g01548 Cla-Chr3:31134582 Cla10g00774 Cla-Chr10:14594346 0 dispersed
Cla04g00061 Cla-Chr4:2014398 Cla10g00774 Cla-Chr10:14594346 2.42E-09 dispersed
Cla08g01205 Cla-Chr8:24958351 Cla10g00774 Cla-Chr10:14594346 0 dispersed
Cla10g00774 Cla-Chr10:14594346 Cla11g01456 Cla-Chr11:28223851 0 dispersed
Cla10g00774 Cla-Chr10:14594346 Cla03g00748 Cla-Chr3:9083328 2.04E-103 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
80849 PF00069 Pkinase 1.30E-42 CL0016 Cla PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla10g00774 - - csv:101219140 1610.12