Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla10g00791 ATGGTGAGATACCTAAGGGACATGGACATCAACAATTCTTCGACACTGTTCAACGTCACACTACAAAGAAAAGGTGGATATGTTATAATGGACAATGGCATTGTCCTAGTTACTCTTTCAACTCCAGATGGCGACGTTATTGGATTGAGCTACAATGGAATCGACAACATTCTCGAAACCAAAAACGATGAGCAAAACAGAGGCTACTGGGACGCCGTATGGAACAACCCAGACGAACCCATTACCACGGACAGATTAAAAGGAGAGAGTTTTGAAGTAATAGTAACGAACGAGGAACAACTGGAAATATCGTTTAAGAAAACATGGAGTTTTGCAGTTGGGAACGAGACGGCCCCCGTAAATGTAGACAAAAGGTATGTATTGCTGAGAGGAAGCTCTGGGTTTTATAGTTATGCAATATTCGAGAGGCCCATTGGTTGGCCCCAGATTGAAATGGATCAAGTTAGGATTGTTTACAAGCTTCAAAGCACAATGTTTGATTATATGGCTGTGTCGGACGATAGGCAAAGGGTGATGCCCACAATGAGAGACCGTGAAAATGGTGAGCCATTGGCTTATCCCGAGGCCGTTCTTTTGACTAATCCTACCAATGAAGAACTCAGAGGAGAGGTGGATGACAAGTACCAGTACTCAACAGAGGACAAGGACAACCAAGTTCACGGCTGGATCTGCAGCGATCCGCCGGTGGGATTCTGGATGATCACTCCCAGCGACGAGTTCCGGGTCGCCGGTCCTGTCAAGCAGGATCTCACCTCCCACGCCGGCCCCATCACTCTCTCCATGTTCGTTAGCACCCACTACGCTGGAAAGGACATTGGCATGAGATTTGCAGCTGGAGAGCCCTGGAAGAAGGTCTTCGGCCCTATCTTTGTCTATCTCAACTCTGTTTCCCCTGAAGAGGATTCTCTATCCCTCTGGCAAGATGCCAAACAACAGTTGGCAATAGAAATCAATGAGTGGCCCTACTCTTTTCCTCAATCAGAAGACTTCCCTTCTTCTGCCCAAAGAGGGAGTGTCACTGGCCGTAGCAAACTCATGCGGGCGAGTAATGCTTTCGTTGGATTGGCATTGCCTGGTCCTGTGGGATCTTGGCAAACGGAAACCAAGGGCTATCAGTTCTGGACTCGAGCTGACAATCACGGCAACTTCTTAATCAATAACATCCGAGCTGGGGTTTACAATCTGTATGCTTTTGTCCCTGGCTTCATTGGAGACTACAAATACGAAGCAAATATTACAATTGAGCTCGGGTCTGAAATCAGATTGGATGTGATGGTGTTTGATCTGCCGAGACAAGGCCCAACCATCTGGGAGATTGGCATTCCCGATCGCACTGCAGCAGAGTTTTATGTGCCCGATCCTTATCCGACTCTCATGAATAAACTGTACAACAACCATGCTGACAAGTTCAGACAATATGGCTTGTGGGAACGTTATGCGGCTATGTATCCAAATAATGATCTTGTGTTTACCGTCGGTGTTGACGATTATACAAGGGACTGGTTCTATGCTCATGTTAACAGGAATGTGGGGAATCAAACATACCAATCGACCACTTGGGAGATCAGATTTTTATTGCAATCTGTGAACCAAACGGCAAATTACACACTGCAAATTGCATTAGCATCTGCTGCTGAATGCGAATTACAGTCTCAGGCGGAAGATTCATTTCAACTGATAGTCTGTTATGTTGTCGATTTGAAGGTTCGATTAAACGATCGAGAATCAGAGCAGGCTGCTTTCTCGACAGGGAAGATCGGAAAGGACAATGCGATTGCAAGGCATGGCATACATGGACTTTACTGGTTATACTCCATACCTCTCCCTGGTGATCAATTTCTACAAGGGAACAACTCCATCTATCTCACTCAGGCAAGAAGCGAAAGCCCTTTCGAAGGTCTCATGTACGACTACATTCGACTTGAAGCTCCACCTCCAACATAA 1965 46.11 MVRYLRDMDINNSSTLFNVTLQRKGGYVIMDNGIVLVTLSTPDGDVIGLSYNGIDNILETKNDEQNRGYWDAVWNNPDEPITTDRLKGESFEVIVTNEEQLEISFKKTWSFAVGNETAPVNVDKRYVLLRGSSGFYSYAIFERPIGWPQIEMDQVRIVYKLQSTMFDYMAVSDDRQRVMPTMRDRENGEPLAYPEAVLLTNPTNEELRGEVDDKYQYSTEDKDNQVHGWICSDPPVGFWMITPSDEFRVAGPVKQDLTSHAGPITLSMFVSTHYAGKDIGMRFAAGEPWKKVFGPIFVYLNSVSPEEDSLSLWQDAKQQLAIEINEWPYSFPQSEDFPSSAQRGSVTGRSKLMRASNAFVGLALPGPVGSWQTETKGYQFWTRADNHGNFLINNIRAGVYNLYAFVPGFIGDYKYEANITIELGSEIRLDVMVFDLPRQGPTIWEIGIPDRTAAEFYVPDPYPTLMNKLYNNHADKFRQYGLWERYAAMYPNNDLVFTVGVDDYTRDWFYAHVNRNVGNQTYQSTTWEIRFLLQSVNQTANYTLQIALASAAECELQSQAEDSFQLIVCYVVDLKVRLNDRESEQAAFSTGKIGKDNAIARHGIHGLYWLYSIPLPGDQFLQGNNSIYLTQARSESPFEGLMYDYIRLEAPPPT 654
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 16105616 16116155 + ClCG10G008270.2 Cla10g00791 282450
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla10g00791 654 SUPERFAMILY Galactose mutarotase-like 30 303 IPR011013 GO:0003824|GO:0005975|GO:0030246
Cla10g00791 654 Gene3D - 17 307 IPR014718 GO:0030246
Cla10g00791 654 PANTHER RHAMNOGALACTURONATE LYASE FAMILY PROTEIN 24 652 - -
Cla10g00791 654 SUPERFAMILY Starch-binding domain-like 341 432 IPR013784 GO:0030246
Cla10g00791 654 Pfam Rhamnogalacturonate lyase family 15 211 IPR010325 -
Cla10g00791 654 CDD RGL4_M 342 429 IPR029413 -
Cla10g00791 654 Pfam Polysaccharide lyase family 4, domain III 442 648 IPR029411 -
Cla10g00791 654 Pfam Polysaccharide lyase family 4, domain II 356 428 IPR029413 -
Cla10g00791 654 Gene3D - 339 432 - -
Cla10g00791 654 CDD RGL4_N 25 309 - -
Cla10g00791 654 PANTHER RHAMNOGALACTURONATE LYASE FAMILY PROTEIN 24 652 - -
Cla10g00791 654 Gene3D - 440 649 - -
Cla10g00791 654 SUPERFAMILY Galactose-binding domain-like 440 649 IPR008979 -
Cla10g00791 654 CDD RGL4_C 444 649 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla08g01151 Cla-Chr8:24302411 Cla10g00791 Cla-Chr10:16105616 0 dispersed
Cla10g00791 Cla-Chr10:16105616 Cla11g01437 Cla-Chr11:27980311 0 dispersed
Cla10g00791 Cla-Chr10:16105616 Cla01g01783 Cla-Chr1:32779400 0 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla10g00791 K18195 - csv:101215252 1197.96