Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla10g00795 ATGGGTTTGGATGATTTTTGTCAAACAGGCTTGGTGTTGGGCTTAGGGCTCTCTAATGATCAAAGGTTGAAGAAGAAGCCTACACCTTGCTCCTCTAGTTCCCTTGATTTTGAGCCTTGTGCTTTGACTTTGGGATTTTCCGGCACTGGAGGCGGCAGCGAAACTCACCAGAAAGTTATTGATGTCAACAACAAGATGATGATGATTAATAACAACAACTCTGATGTGGGTGTTCATCATTTGCATCGACAAGAAGCTTCCACTCATAGCAGCAGCGCTGTTTGTTCTTCCTTCTCCGGCGGCGGTAGGGTTAAAAGGGAGAGAGATCTTAGCAGCGAAGAAGTTCAATTGGACAGACTTTCTTCTAGAGTTAGTGATGAAGATGAAGATGGTTCTAATGCTAGAAAGAAACTTAGGCTCTCTAAACAACAAGCCGCTCTCTTGGAACAAAGTTTCAAGCAAAATAGCACCCTCAATCCTAAGCAAAAACAAGCCTTGGCGAGACAGCTAAATCTACGGCCACGACAAGTTGAAGTATGGTTTCAAAATAGGAGAGCTCGAACAAAACTGAAACAAACAGAAGTAGACTGTGAGTTATTGAAGAAGTGTTGTGAGACGTTGACAGATGAAAATAGAAGGCTACAAAAGGAGCTTCAAGAATTGAAGTCGTTAAAGCTGGCTCAACCACTATACATGCAGATGCCGGCGGCGACATTAACTATATGCCCCTCCTGCGAAAGGCTCGGCAGCGGCGGCGGCGCTTCCAAACCCAAATTTTCAATGGCTCCTACGCCTCACTTTTACAACCCCTTCTCCAGTCCTTCCGCCGCATGTTAG 837 45.16 MGLDDFCQTGLVLGLGLSNDQRLKKKPTPCSSSSLDFEPCALTLGFSGTGGGSETHQKVIDVNNKMMMINNNNSDVGVHHLHRQEASTHSSSAVCSSFSGGGRVKRERDLSSEEVQLDRLSSRVSDEDEDGSNARKKLRLSKQQAALLEQSFKQNSTLNPKQKQALARQLNLRPRQVEVWFQNRRARTKLKQTEVDCELLKKCCETLTDENRRLQKELQELKSLKLAQPLYMQMPAATLTICPSCERLGSGGGASKPKFSMAPTPHFYNPFSSPSAAC 278
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 17043236 17044586 - ClCG10G008310.1 Cla10g00795 282454
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla10g00795 278 MobiDBLite consensus disorder prediction 81 137 - -
Cla10g00795 278 ProSitePatterns 'Homeobox' domain signature. 166 189 IPR017970 GO:0000981|GO:0006355
Cla10g00795 278 Gene3D - 139 189 - -
Cla10g00795 278 Pfam Homeobox associated leucine zipper 191 224 IPR003106 GO:0006355|GO:0043565
Cla10g00795 278 MobiDBLite consensus disorder prediction 102 137 - -
Cla10g00795 278 SUPERFAMILY Homeodomain-like 122 192 IPR009057 -
Cla10g00795 278 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT22-LIKE 6 278 - -
Cla10g00795 278 ProSiteProfiles 'Homeobox' domain profile. 131 191 IPR001356 GO:0003677
Cla10g00795 278 SMART halz 191 234 IPR003106 GO:0006355|GO:0043565
Cla10g00795 278 Coils Coil 197 227 - -
Cla10g00795 278 SMART HOX_1 133 195 IPR001356 GO:0003677
Cla10g00795 278 Pfam Homeodomain 135 189 IPR001356 GO:0003677
Cla10g00795 278 PANTHER - 6 278 - -
Cla10g00795 278 CDD homeodomain 135 192 IPR001356 GO:0003677
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla01g01751 Cla-Chr1:32436325 Cla10g00795 Cla-Chr10:17043236 8.57E-102 dispersed
Cla05g01809 Cla-Chr5:30009259 Cla10g00795 Cla-Chr10:17043236 2.38E-70 dispersed
Cla06g01380 Cla-Chr6:27309972 Cla10g00795 Cla-Chr10:17043236 2.37E-56 dispersed
Cla09g00345 Cla-Chr9:3389307 Cla10g00795 Cla-Chr10:17043236 4.63E-67 dispersed
Cla10g00795 Cla-Chr10:17043236 Cla10g01206 Cla-Chr10:26697926 2.60E-51 dispersed
Cla10g00795 Cla-Chr10:17043236 Cla10g01677 Cla-Chr10:32506524 1.58E-66 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
61862 PF00046 Homeodomain 5.20E-16 CL0123 Cla TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla10g00795 K09338 - csv:101205848 370.548