Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla10g00822 ATGGAGGTGGAGGAGCACGAAGAAGAAGACATGGAAATAGTAGAACCAGCATCAAACTACATCAACAAAATCCACCCACTTTCCCGGCACACAAAAAACCCATCTCCGGTCCACTCGAACCCCATCCTATACAACTACAAAGAATGCTTAAAAAATCACGCCGTCGCCGTCGGCGGTCACGCCCTCGACGGGTGCGGCGAGTTCATGCCCAGCGGACCGCACGGCTCTCTCGACGCCCTCAAATGTGCTGCCTGCCACTGCCACCGCAACTTCCACCGCAAAGACATCACTGACGACGGCGGCGTCAACGGAGAATCAGGGTCGCAGTACATTTCGTACTGGCGTGCTCCGAGGATGCTGGCGCTGCCTTCTCCGTCGTCAGCACGGAAGCGAGTGCGGACGAAGTTCACGGAAGAGCAGAAGGAGAAGATGGTGGAGATGGCGGAGAAAATGGAGTGGCGGATTCAGAAGACGGATGAAGCGGCGGTGATGGAATTCTGCAATGAAATCGGCGTGAAGCGGCGAGTGTTGAAGGTTTGGATGCATAACAACAAGAACACGTTTCGTAGTAAGGAATCCAAACAAAACTAA 591 53.98 MEVEEHEEEDMEIVEPASNYINKIHPLSRHTKNPSPVHSNPILYNYKECLKNHAVAVGGHALDGCGEFMPSGPHGSLDALKCAACHCHRNFHRKDITDDGGVNGESGSQYISYWRAPRMLALPSPSSARKRVRTKFTEEQKEKMVEMAEKMEWRIQKTDEAAVMEFCNEIGVKRRVLKVWMHNNKNTFRSKESKQN 196
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 18738109 18738699 + ClCG10G008590.1 Cla10g00822 282481
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla10g00822 196 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 46 95 IPR006456 -
Cla10g00822 196 TIGRFAM ZF_HD_prot_N: ZF-HD homeobox protein Cys/His-rich dimerization domain 45 95 IPR006456 -
Cla10g00822 196 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 4 27 100 - -
Cla10g00822 196 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 27 100 - -
Cla10g00822 196 SUPERFAMILY Homeodomain-like 123 189 IPR009057 -
Cla10g00822 196 TIGRFAM homeo_ZF_HD: homeobox domain, ZF-HD class 129 186 IPR006455 -
Cla10g00822 196 Pfam ZF-HD protein dimerisation region 45 96 IPR006456 -
Cla10g00822 196 Gene3D - 121 191 - -
Cla10g00822 196 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 124 191 - -
Cla10g00822 196 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 4 124 191 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla10g00822 Cla-Chr10:18738109 Cla10g01433 Cla-Chr10:29446793 4.78E-47 dispersed
Cla10g00822 Cla-Chr10:18738109 Cla01g01913 Cla-Chr1:33858466 2.22E-49 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
61864 PF04770 ZF-HD_dimer 4.60E-28 No_clan Cla TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla10g00822 - - cpep:111809080 256.914