Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla10g00822 ATGGAGGTGGAGGAGCACGAAGAAGAAGACATGGAAATAGTAGAACCAGCATCAAACTACATCAACAAAATCCACCCACTTTCCCGGCACACAAAAAACCCATCTCCGGTCCACTCGAACCCCATCCTATACAACTACAAAGAATGCTTAAAAAATCACGCCGTCGCCGTCGGCGGTCACGCCCTCGACGGGTGCGGCGAGTTCATGCCCAGCGGACCGCACGGCTCTCTCGACGCCCTCAAATGTGCTGCCTGCCACTGCCACCGCAACTTCCACCGCAAAGACATCACTGACGACGGCGGCGTCAACGGAGAATCAGGGTCGCAGTACATTTCGTACTGGCGTGCTCCGAGGATGCTGGCGCTGCCTTCTCCGTCGTCAGCACGGAAGCGAGTGCGGACGAAGTTCACGGAAGAGCAGAAGGAGAAGATGGTGGAGATGGCGGAGAAAATGGAGTGGCGGATTCAGAAGACGGATGAAGCGGCGGTGATGGAATTCTGCAATGAAATCGGCGTGAAGCGGCGAGTGTTGAAGGTTTGGATGCATAACAACAAGAACACGTTTCGTAGTAAGGAATCCAAACAAAACTAA 591 53.98 MEVEEHEEEDMEIVEPASNYINKIHPLSRHTKNPSPVHSNPILYNYKECLKNHAVAVGGHALDGCGEFMPSGPHGSLDALKCAACHCHRNFHRKDITDDGGVNGESGSQYISYWRAPRMLALPSPSSARKRVRTKFTEEQKEKMVEMAEKMEWRIQKTDEAAVMEFCNEIGVKRRVLKVWMHNNKNTFRSKESKQN 196
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 18738109 18738699 + ClCG10G008590.1 Cla10g00822 282481

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla10g00822 196 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 46 95 IPR006456 -
Cla10g00822 196 TIGRFAM ZF_HD_prot_N: ZF-HD homeobox protein Cys/His-rich dimerization domain 45 95 IPR006456 -
Cla10g00822 196 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 4 27 100 - -
Cla10g00822 196 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 27 100 - -
Cla10g00822 196 SUPERFAMILY Homeodomain-like 123 189 IPR009057 -
Cla10g00822 196 TIGRFAM homeo_ZF_HD: homeobox domain, ZF-HD class 129 186 IPR006455 -
Cla10g00822 196 Pfam ZF-HD protein dimerisation region 45 96 IPR006456 -
Cla10g00822 196 Gene3D - 121 191 - -
Cla10g00822 196 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 124 191 - -
Cla10g00822 196 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 4 124 191 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla10g00822 - - - cpep:111809080 256.914
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla10g00822 Cla-Chr10:18738109 Cla10g01433 Cla-Chr10:29446793 4.78E-47 dispersed
Cla10g00822 Cla-Chr10:18738109 Cla01g01913 Cla-Chr1:33858466 2.22E-49 transposed
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cla10g00822 . 46 187 ZF-HD Transcription Factor Family AT4G24660 50.9 1.9e-41 166.4
Cla11g00012 . 83 292 ZF-HD Transcription Factor Family AT2G02540 52.3 1.6e-51 200.3
Cla11g00012 . 83 292 ZF-HD Transcription Factor Family AT1G14440 54.5 9.0e-55 211.1
Cla01g01913 CCT,ECH 135 341 ZF-HD Transcription Factor Family AT2G18350 52.9 3.3e-50 195.7
Cla10g01433 . 12 268 ZF-HD Transcription Factor Family AT5G15210 53.9 4.0e-51 198.7
Cla09g01783 . 1 255 ZF-HD Transcription Factor Family AT5G15210 51.8 5.2e-51 198.4
Cla10g01433 . 22 281 ZF-HD Transcription Factor Family AT3G28920 61.5 1.4e-60 230.3
Cla09g01783 . 17 257 ZF-HD Transcription Factor Family AT3G28920 59.3 3.0e-58 222.6
Cla09g01783 . 25 261 ZF-HD Transcription Factor Family AT5G39760 56.4 2.9e-51 199.5
Cla10g01433 . 30 271 ZF-HD Transcription Factor Family AT5G39760 56.1 2.3e-48 189.9
Cla09g01783 . 57 258 ZF-HD Transcription Factor Family AT1G69600 50.2 1.4e-47 186.8
Cla11g00012 . 83 292 ZF-HD Transcription Factor Family AT2G02540 52.3 1.6e-51 200.3
Cla10g00822 . 46 187 ZF-HD Transcription Factor Family AT4G24660 50.9 1.9e-41 166.4
Cla09g01783 . 25 261 ZF-HD Transcription Factor Family AT5G39760 56.4 2.9e-51 199.5
Cla10g01433 . 30 271 ZF-HD Transcription Factor Family AT5G39760 56.1 2.3e-48 189.9
Cla01g01913 CCT,ECH 135 341 ZF-HD Transcription Factor Family AT2G18350 52.9 3.3e-50 195.7
Cla09g01783 . 57 258 ZF-HD Transcription Factor Family AT1G69600 50.2 1.4e-47 186.8
Cla10g01433 . 12 268 ZF-HD Transcription Factor Family AT5G15210 53.9 4.0e-51 198.7
Cla09g01783 . 1 255 ZF-HD Transcription Factor Family AT5G15210 51.8 5.2e-51 198.4
Cla11g00012 . 83 292 ZF-HD Transcription Factor Family AT1G14440 54.5 9.0e-55 211.1
Cla10g01433 . 22 281 ZF-HD Transcription Factor Family AT3G28920 61.5 1.4e-60 230.3
Cla09g01783 . 17 257 ZF-HD Transcription Factor Family AT3G28920 59.3 3.0e-58 222.6
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000801 3 3 3 2 2 3 5 3 3 2 2 3 5 2 2 3 3 5 5 3 2 2 3 3 3 3 3 4 3 2 90
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
61864 PF04770 ZF-HD_dimer 4.60E-28 No_clan Cla TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla10g00822 Cla_Chr10 FPKM 8.848797 13.834215 16.61879 14.965329 23.194233 19.265831 14.033912 15.753409 15.447105 16.483677