Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla10g00855 ATGGGTATTTGCCCATGTTCGAAAATATGTTTATCTGAGTTGTTTTTACTCCACAATCAAGTTAACTGCCATCTCTTTTCGAGAAGAGCGTGCTATTCTTCCTTGTCGGTGTTGTTGGTGGAAGACCACGTGTTTGATGAAAGTCCAGTAGCTCAAATTAAAGTTCTTCCTGAAATTAACGTCAGAAGAAACTGTTCAATTCTTAGGAGGAAGGGGAAGCTCTTTCCTTTAGTTGTTCGGGTTCTAAAATCTTTGAACTGGAGGGTTGCGAGGCAGATAAGATTCTCAACAGCCGTGAAACGTTATGGGCATTTGAACTCTCTATGTGCATTTAGAATTATGGTTCATGTATTTGCATTAGCGGAAATGCGGATGGAAGTCTACTCTCTTCTTAAAGATATCGTTTGCCACACTAGGAAGGCTAAGCAAGATTTATCTGGATTGTTCCCATTTCTTATGGACTCGAATTATGATGTGGAGAAGTCAAGTATCGTGCTTGACCTGCTTATAAAGGTTTTCTCTGGAAATTCAATGGTTGAGAATGCTGTGGAAGTGTTTATTCAAGCCAAGAAAATGGGAATCATGCCAGATATTTCGTCATGCAATTTTTTGCTCAAGTGCTTGGGTGAAGCAAACAGAGAGGATTTTGTTAGATGTTTGTTTGAGGATTTGAAGACTTCTGGCCCAAATCCTACTGTATATACCTACACAATTATGATGAACTTCTTTTGCCAAGGATTAAATGGGCGTGATGTCAACATTAAAGAAGCAACCTTTCTTCTAGAGGAATTAATGAGGAGTGGTGAGAGACCCACTGTTGTAACGTACAGCATTTACATCCGTGCACTTTGTAAAGTTGTTTCTGGTCAGTCTGCTTTGGACTTCATTCAAGATCTGAGACTCAAGAACCAACCTCTTAATGCTTATTGTTACAATCCAATTCTTCATAAATTTTGTCAAGAGGGTAAGACGGAGGAAGCTATGAAGGTTTTGCAGGAAATGATGGGTTATGGAATACTACCAGATGCATGTAGTTATAGTATTTTGGTTGATGGGTTCTGCAAGAGAGGGGAAAATGATAAAGGTCTCAATCTGATTGAGGAAATGGAACTTTGTCAACTAAAACCATCCCTAGTCACCTATTCATCTCTGATTTATGGTCTTTGTAAGAGAGGATTGATGGATCTCTCCCTAGATATTTTTCGTAAACTTCAGAAACTTGGTTACAAATATGACTTGGTTGTTTATGACATTTTGATCAGAGGATTTTTTTCTCACGATGATATGGAGTATGCTAAAAAACTTTTGGATGAGATGGTAAATGATTTATGTCCTGATGCTTTTAATTTTAATGCAATGATTCGTTGGCTTTGCAAGATGGGACACTTTGATAAAGCCATAGGACTTCTCAATCTCATGCTAAAATATTGTGGTTTGGCTGATACGATGACTTGCAATTTTATTGTAGATGGGTACTGCAGAGAAGGGAACTTGGAGGAGGCCCTGAAATTAATGATTTATATGAAAGATCATGGTATCATGCCTAATTCGTACACATTCAATATAATCATGAAGAGATTGTGTGAGGAAGGAAGACTGGAAAAAGTGTGGGAGCTTTTCCCTGCAATGCTAAAGTTGAATATACTTCCAGGGTTGGTACATTATAGTACTCTTATTGATGGTTTTGCAAAGCATTCTAATATGAAAAAGGCATTAATGCTGTATGAAAGAATGGAAAGGCTAGGAGTTCCACCAGACACTGTCGCTTCTACTATCATTATTAATATGTTATGCCAGAGGAATGAAACATATCGGGCATATAAATTATTTAAGGAATTGATTGTAAAAGGTATGAATCTAGATAAGATTCTGTACACTTCTATGATAGCTGGATTTAGTAGAACGGGAGACATGAAGAAGGCATGTGCTTTGTTTAATAAAATGTCAAATGAAGGATGTTCACCTACTGTTGTTACTTACACTTGTTTAATTGATGGATTCTTCAAGTTAAGACGCTTGGATCTTGCAAGCTTTTTGGTTGATGATATGAAGAGAAATAATCTTACACCAGATGTGATAGTTTACACGGTTCTTATTGTTGGGCTGCTTAGACTTGGAAAGATTGAAAAAGCACGTGAACTGGTTGATGAAGTGAGAGCGGGTGGTATAATTTCAGAAGATGCTACTTTTCAAATGCTGGCTTCTAGCATTGTTAATCAGAAGTTGGAGTGCTAA 2235 37.49 MGICPCSKICLSELFLLHNQVNCHLFSRRACYSSLSVLLVEDHVFDESPVAQIKVLPEINVRRNCSILRRKGKLFPLVVRVLKSLNWRVARQIRFSTAVKRYGHLNSLCAFRIMVHVFALAEMRMEVYSLLKDIVCHTRKAKQDLSGLFPFLMDSNYDVEKSSIVLDLLIKVFSGNSMVENAVEVFIQAKKMGIMPDISSCNFLLKCLGEANREDFVRCLFEDLKTSGPNPTVYTYTIMMNFFCQGLNGRDVNIKEATFLLEELMRSGERPTVVTYSIYIRALCKVVSGQSALDFIQDLRLKNQPLNAYCYNPILHKFCQEGKTEEAMKVLQEMMGYGILPDACSYSILVDGFCKRGENDKGLNLIEEMELCQLKPSLVTYSSLIYGLCKRGLMDLSLDIFRKLQKLGYKYDLVVYDILIRGFFSHDDMEYAKKLLDEMVNDLCPDAFNFNAMIRWLCKMGHFDKAIGLLNLMLKYCGLADTMTCNFIVDGYCREGNLEEALKLMIYMKDHGIMPNSYTFNIIMKRLCEEGRLEKVWELFPAMLKLNILPGLVHYSTLIDGFAKHSNMKKALMLYERMERLGVPPDTVASTIIINMLCQRNETYRAYKLFKELIVKGMNLDKILYTSMIAGFSRTGDMKKACALFNKMSNEGCSPTVVTYTCLIDGFFKLRRLDLASFLVDDMKRNNLTPDVIVYTVLIVGLLRLGKIEKARELVDEVRAGGIISEDATFQMLASSIVNQKLEC 744
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 19576698 19578932 - ClCG10G008950.1 Cla10g00855 282514

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla10g00855 744 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 621 655 IPR002885 -
Cla10g00855 744 TIGRFAM PPR: pentatricopeptide repeat domain 484 516 IPR002885 -
Cla10g00855 744 TIGRFAM PPR: pentatricopeptide repeat domain 658 692 IPR002885 -
Cla10g00855 744 TIGRFAM PPR: pentatricopeptide repeat domain 450 476 IPR002885 -
Cla10g00855 744 TIGRFAM PPR: pentatricopeptide repeat domain 554 587 IPR002885 -
Cla10g00855 744 TIGRFAM PPR: pentatricopeptide repeat domain 518 550 IPR002885 -
Cla10g00855 744 TIGRFAM PPR: pentatricopeptide repeat domain 693 723 IPR002885 -
Cla10g00855 744 TIGRFAM PPR: pentatricopeptide repeat domain 309 343 IPR002885 -
Cla10g00855 744 TIGRFAM PPR: pentatricopeptide repeat domain 345 377 IPR002885 -
Cla10g00855 744 TIGRFAM PPR: pentatricopeptide repeat domain 624 657 IPR002885 -
Cla10g00855 744 TIGRFAM PPR: pentatricopeptide repeat domain 414 441 IPR002885 -
Cla10g00855 744 TIGRFAM PPR: pentatricopeptide repeat domain 379 412 IPR002885 -
Cla10g00855 744 Gene3D Tetratricopeptide repeat domain 58 222 IPR011990 GO:0005515
Cla10g00855 744 Gene3D Tetratricopeptide repeat domain 371 441 IPR011990 GO:0005515
Cla10g00855 744 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 481 515 IPR002885 -
Cla10g00855 744 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 377 411 IPR002885 -
Cla10g00855 744 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 691 725 IPR002885 -
Cla10g00855 744 PANTHER (PPR) REPEAT PROTEIN, PUTATIVE-RELATED 7 730 - -
Cla10g00855 744 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 412 442 IPR002885 -
Cla10g00855 744 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 551 585 IPR002885 -
Cla10g00855 744 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 446 476 IPR002885 -
Cla10g00855 744 Pfam Pentatricopeptide repeat domain 188 243 IPR002885 -
Cla10g00855 744 Pfam Pentatricopeptide repeat domain 679 724 IPR002885 -
Cla10g00855 744 Pfam PPR repeat 374 403 IPR002885 -
Cla10g00855 744 Pfam PPR repeat 408 440 IPR002885 -
Cla10g00855 744 Pfam PPR repeat 442 473 IPR002885 -
Cla10g00855 744 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 7 730 - -
Cla10g00855 744 Pfam PPR repeat family 481 528 IPR002885 -
Cla10g00855 744 Pfam PPR repeat family 623 669 IPR002885 -
Cla10g00855 744 Pfam PPR repeat family 550 599 IPR002885 -
Cla10g00855 744 Pfam PPR repeat family 307 355 IPR002885 -
Cla10g00855 744 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 342 376 IPR002885 -
Cla10g00855 744 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 307 341 IPR002885 -
Cla10g00855 744 Gene3D Tetratricopeptide repeat domain 541 743 IPR011990 GO:0005515
Cla10g00855 744 Gene3D Tetratricopeptide repeat domain 442 540 IPR011990 GO:0005515
Cla10g00855 744 Gene3D Tetratricopeptide repeat domain 223 370 IPR011990 GO:0005515
Cla10g00855 744 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 656 690 IPR002885 -
Cla10g00855 744 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 516 550 IPR002885 -
Cla10g00855 744 SUPERFAMILY HCP-like 427 653 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla10g00855 - - - mcha:111022308 1166.76
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla10g00855 Cla-Chr10:19576698 Cla02g00584 Cla-Chr2:6338999 9.25E-31 dispersed
Cla10g00855 Cla-Chr10:19576698 Cla02g01383 Cla-Chr2:28248026 5.35E-40 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g1067 . . . . . . . . . . . . . . . . . . . . . . . . Cla10g00855 Cam10g0875 Cec10g0905 Cco10g0858 Clacu10g0900 Cmu10g1692 Cre10g1063 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003935 0 8 0 0 1 1 1 1 1 0 1 1 1 0 0 1 1 0 1 1 0 0 1 1 0 1 1 1 0 1 26
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla10g00855 Cla_Chr10 FPKM 2.976159 3.31429 0.466518 0.405723 5.781697 6.541677 6.669219 0.156519 0.127942 0.127528