Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla10g00873 ATGATTAAGAGATTGACTGCACGAGCATACGTGGCCGAAGTTGATTGGAAAGACCATGTCATCGGAAAATTCATCCGAAGAAGTCTTGAAAGAGAAACCCTAACATCGAATTCCATATCGATTCTGCCCAGCTCACTATTCTACAAATTGTCTGGTTCGTCAGTCATTGATTTCCAATTGGATTGCCGCCGAGATCTAGCCGGCCATAGACAGCCTGCAGTAGAGAGAATGATGAAGCTGCAAACATATGCGGGGATTAGTTTCATTGCAACCATAGTGGTTATCTATCATGCCTTCAACAGTAGAGGGCAATTTTACCCAGCATTGGTCTATTTATCGACTTCCAAGATAAATCTAGTGCTTCTTCTCAATATGGGTTTAGTCATCATGTGCATTTTGTGGCAGCTAACAAAAAAAATATTTCTCGGTTCTCTTAGAGAAGCAGAAGTTGAGAGGCTCAACGAGCAATCATGGAAGGAGTTGATGGAAATCCTCTTTGCCATCACTATTTTCCGCCAAGATTTTTCTGTTGCATTCCTGGGTATGGTTACAGCTCTGTTGTTGATCAAAGCTCTGCATTGGCTGGCTCAGAAGAGGGTTGAATACATGGAAACCACTCCATCGGTGCCGTTGTTGTCTCATATCCGGATAGTTTCTTTCTTAGGCTTCCTCTTTGTTCTAGATAGTCTGTTTTTTTATAATTCGATAGAATCTCTGATACAGACAAAGAAGGCCTCGGTTTCCCTCTTCTTTTCATTTGAGTATATGATTCTTGCGACGACAGCTGTGTCAACATTTGTAAAATATATTTTCTATGTTAGTGATGTGCTCATGGAGGGACAATGGGAAAGGAAGCCCGTCTATACATTTTACTTGGAGCTTATCCGGGACTTGCTTCACTTGTCGATGTACTTGTGTTTCTTTCTTGTGATTTTCATGACTTATGGTGTGCCTTTGCACTTGATCCGAGAGCTCTATGAGATCTTTAGGAATTTTAGGATTCGCATTGCAGATTACATCCGTTATAGAAAGATCACTTCAAATATGAATGATCGTTTTCCAGATGCAACGCCAGAAGAACTCAATTCAAGTGATGCAACATGCATTATTTGTCGTGAAGAGATGACAGTTGCAAAGAAACTAGTATGTGGACATCTTTTTCATGTGCATTGCCTCCGATCCTGGTTGGAGCGACAGCATACTTGTCCCACTTGCAGAGCCCTTGTTGTACCACCTGAAGGTTCAAGCGGAGCAGGCGGTCATCATGGAGTGCAGTCTGATGCTAACCAACAAGGAACAGGAACTACTAGTTCATCTGCACAAGGTACCAGTGGTACGGGTGATGCTAATGATAATTTGAGTCGTCATCAGGCTAGAGTCCGAGCTGCTGCAGCAGCTGCTTCAATATATGAGAAATCATATGTTTATCCTTTTGCGAGCACATTAGTATGGTCTCCTGGATATGCAGTTGAAAGACCTATGCCTGACTCCATCAATACAGAAACGAATGGAGAACAAGCTCCCAATGGACATCCACAATACTTTTCATTTCCTGGCGGCCCTTCAAACCTATCCTTCACTCAATTTCCCCAAAATCTCTTTGTTCCTTTTCAGCCACGAGAGGGCACTGGAAACAATACAGATGGATCGGGCAGTAGTCTAAATGTATCAGGCTCACAGCTTGAAGCTCAAGAAAGATTTCTTCAACAACAGATTGAGATCCTTCAGAATCAGCTGCAACTTCTCCGTAAACCAAAAATTGAGGAAAACTCAAGAGCAAATGAAGCAGATAAGAAAGGGAAAAGCGTAACATCCTCTGCACTATCATCGTCTTCATCAGATTCTCATCGGCCTGGAGAAACCGAAAGTCTGGTGAGATAG 1881 42.48 MIKRLTARAYVAEVDWKDHVIGKFIRRSLERETLTSNSISILPSSLFYKLSGSSVIDFQLDCRRDLAGHRQPAVERMMKLQTYAGISFIATIVVIYHAFNSRGQFYPALVYLSTSKINLVLLLNMGLVIMCILWQLTKKIFLGSLREAEVERLNEQSWKELMEILFAITIFRQDFSVAFLGMVTALLLIKALHWLAQKRVEYMETTPSVPLLSHIRIVSFLGFLFVLDSLFFYNSIESLIQTKKASVSLFFSFEYMILATTAVSTFVKYIFYVSDVLMEGQWERKPVYTFYLELIRDLLHLSMYLCFFLVIFMTYGVPLHLIRELYEIFRNFRIRIADYIRYRKITSNMNDRFPDATPEELNSSDATCIICREEMTVAKKLVCGHLFHVHCLRSWLERQHTCPTCRALVVPPEGSSGAGGHHGVQSDANQQGTGTTSSSAQGTSGTGDANDNLSRHQARVRAAAAAASIYEKSYVYPFASTLVWSPGYAVERPMPDSINTETNGEQAPNGHPQYFSFPGGPSNLSFTQFPQNLFVPFQPREGTGNNTDGSGSSLNVSGSQLEAQERFLQQQIEILQNQLQLLRKPKIEENSRANEADKKGKSVTSSALSSSSSDSHRPGETESLVR 626
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 19995890 20004864 + ClCG10G009140.1 Cla10g00873 282532
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla10g00873 626 ProSiteProfiles Zinc finger RING-type profile. 368 406 IPR001841 -
Cla10g00873 626 PANTHER - 77 536 - -
Cla10g00873 626 Pfam Ring finger domain 367 406 IPR001841 -
Cla10g00873 626 MobiDBLite consensus disorder prediction 585 599 - -
Cla10g00873 626 MobiDBLite consensus disorder prediction 582 626 - -
Cla10g00873 626 SUPERFAMILY RING/U-box 348 413 - -
Cla10g00873 626 SMART ring_2 368 405 IPR001841 -
Cla10g00873 626 PANTHER RING ZINC FINGER PROTEIN 77 536 - -
Cla10g00873 626 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 340 411 IPR013083 -
Cla10g00873 626 Coils Coil 558 578 - -
Cla10g00873 626 MobiDBLite consensus disorder prediction 600 618 - -
Cla10g00873 626 CDD RING-H2_synoviolin 365 406 - -
Cla10g00873 626 MobiDBLite consensus disorder prediction 416 452 - -
Cla10g00873 626 MobiDBLite consensus disorder prediction 422 452 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla07g00504 Cla-Chr7:7286543 Cla10g00873 Cla-Chr10:19995890 4.68E-10 dispersed
Cla09g01274 Cla-Chr9:18874736 Cla10g00873 Cla-Chr10:19995890 1.10E-25 dispersed
Cla10g00873 Cla-Chr10:19995890 Cla11g01527 Cla-Chr11:28904384 3.38E-08 dispersed
Cla10g00873 Cla-Chr10:19995890 Cla05g02437 Cla-Chr5:35850795 7.85E-08 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla10g00873 K10601 - csv:101215351 957.592