Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla10g00875 ATGTCGGTGATGTTGGGTTCTTGCTCTTCTTCTCTGTGGATCGTTTTCGTGTTGGGTTTTGTTTCCTTGCTCTCTGCTAATCCTGAAGGCGATGCTTTGAATGCATTGAAGTCAAATTTACAAGATCCCAACGGTGTACTACAGAGTTGGGATCCTACACTTGTTAATCCTTGCACATGGTTCCATGTCACCTGTGACAGTGAGAATAGTGTCACTCGAGTTGATCTTGGAAATGCCAATCTATCTGGCACGTTGGTTCCACAACTTGGTGATCTTAAGAATTTGCAATATCTGGAGCTTTACAGTAACAATATTAGTGGAGAAATTCCCTCGGAGCTTGGGCTTTTGACAAACTTGGTGAGCTTGGATCTTTACTTGAACAATTTAACTGGTCCCATACCATTCACACTTGGCGAGCTTGAAAAACTGCGTTTCCTGCGTCTTAACAACAACAGCTTATCAGGAACCATTCCAATGTCATTAACTAATGTTAAATCCTTGCAAGTCCTGGATCTTTCATACAACAAGCTAACTGGAGATATCCCGGTCAATGGTTCTTTTTCTCTTTTTACCCCTATCAGTTTTGCTCATAACCTTCTCAATGAATCTGCTGCACATACTCCACCACCTCCTCTACCTTCTTCACCAAGTCCTGTATCAGGCAATAGTGCCACTGGAGCTATTGCTGGTGGAGTTGCTGCTGCTGCTGCTTTACTGTTTGCTGCTCCTGCCGTTGCGGTTGCTCTGTGGCGACGGAAGAAGCCACAAGATCATTTCTTTGATGTACCTGCCGAAGAGGATCCAGAAGTTCATCTTGGTCAGCTCAAGAGGTTCTCTCTTCGTGAACTACAAGTTGCAACGGATCATTTTAGCAACAAACATATTCTAGGGAGAGGTGGTTTTGGCAAGGTCTATAAGGGACGGCTGGCTGATGGATCTCTAGTGGCAGTTAAAAGACTCAAAGAGGAGCGTTCACAGGGTGGGGAGCTGCAATTTCAAACAGAAGTAGAGATGATCAGCATGGCTGTGCATCGTAATCTGCTCCGCCTGCGTGGCTTTTGTATGACACCAACTGAGCGGTTGTTGGTCTATCCATTTATGGTTAACGGAAGTGTAGCATCATGTTTGAGAGAACGCCGAGAAGCACAACCTCCACTTAATTGGTTGAATCGAAAACGCATTGCTTTGGGAGCTGCAAGGGGGCTTGCTTATCTACATGATCATTGTGATCCTAAGATTATTCATCGTGATGTGAAAGCTGCGAACATTTTACTTGACGAGGAGTATGAAGCTGTTGTTGGTGATTTTGGGTTGGCTAAACTCATGGACTACAAAGATACTCATGTCACAACTGCAGTACGAGGAACAATTGGGCATATAGCTCCTGAATACCTTTCGACTGGAAAGTCTTCTGAAAAGACTGATGTTTTTGGGTATGGGGTAATGCTTCTTGAACTCATAACTGGACAGAGGGCCTTTGATCTTGCCCGGCTTGCAAATGATGACGACGTCATGCTTCTTGATTGGGTGAAAGGACTTCTGAAAGACAAGAGGTTGGAAACACTAGTTGATCCCGATCTTGCGGGAAAATATCCCGACGACGAAGTCGAGCAGCTTATACAAGTTGCCTTGTTGTGCACACAAGGCACTCCTACAGAACGGCCTAAGATGTCAGAGGTTGTACGGATGCTTGAGGGTGATGGTTTAGCTGAAAGATGGGAAGAATGGCAGAAAGAGGAGCGGTTTCATCAAGACTTAAGCCGCAATCCCCACCCAAGTACGACTTGGATTCTCGACTCTACTGCTGAAATTCCTCCCGATGAATTGTCCGGTCCAAGATGA 1842 45.17 MSVMLGSCSSSLWIVFVLGFVSLLSANPEGDALNALKSNLQDPNGVLQSWDPTLVNPCTWFHVTCDSENSVTRVDLGNANLSGTLVPQLGDLKNLQYLELYSNNISGEIPSELGLLTNLVSLDLYLNNLTGPIPFTLGELEKLRFLRLNNNSLSGTIPMSLTNVKSLQVLDLSYNKLTGDIPVNGSFSLFTPISFAHNLLNESAAHTPPPPLPSSPSPVSGNSATGAIAGGVAAAAALLFAAPAVAVALWRRKKPQDHFFDVPAEEDPEVHLGQLKRFSLRELQVATDHFSNKHILGRGGFGKVYKGRLADGSLVAVKRLKEERSQGGELQFQTEVEMISMAVHRNLLRLRGFCMTPTERLLVYPFMVNGSVASCLRERREAQPPLNWLNRKRIALGAARGLAYLHDHCDPKIIHRDVKAANILLDEEYEAVVGDFGLAKLMDYKDTHVTTAVRGTIGHIAPEYLSTGKSSEKTDVFGYGVMLLELITGQRAFDLARLANDDDVMLLDWVKGLLKDKRLETLVDPDLAGKYPDDEVEQLIQVALLCTQGTPTERPKMSEVVRMLEGDGLAERWEEWQKEERFHQDLSRNPHPSTTWILDSTAEIPPDELSGPR 613
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 20028784 20035805 + ClCG10G009160.2 Cla10g00875 282534
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla10g00875 613 Gene3D Ribonuclease Inhibitor 26 206 IPR032675 -
Cla10g00875 613 Gene3D Phosphorylase Kinase; domain 1 259 366 - -
Cla10g00875 613 SUPERFAMILY Protein kinase-like (PK-like) 269 565 IPR011009 -
Cla10g00875 613 Gene3D Transferase(Phosphotransferase) domain 1 367 584 - -
Cla10g00875 613 SUPERFAMILY L domain-like 28 203 - -
Cla10g00875 613 PANTHER BNAA08G11770D PROTEIN 8 613 IPR031048 GO:0004675|GO:0005102|GO:0006468
Cla10g00875 613 ProSitePatterns Serine/Threonine protein kinases active-site signature. 413 425 IPR008271 GO:0004672|GO:0006468
Cla10g00875 613 PANTHER SOMATIC EMBRYOGENESIS RECEPTOR KINASE 1 8 613 - -
Cla10g00875 613 MobiDBLite consensus disorder prediction 580 613 - -
Cla10g00875 613 Pfam Leucine rich repeat N-terminal domain 26 66 IPR013210 -
Cla10g00875 613 Pfam Protein kinase domain 291 562 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cla10g00875 613 ProSiteProfiles Protein kinase domain profile. 290 577 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cla10g00875 613 ProSitePatterns Protein kinases ATP-binding region signature. 296 318 IPR017441 GO:0005524
Cla10g00875 613 SMART serkin_6 290 564 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cla10g00875 613 ProSiteProfiles Leucine-rich repeat profile. 94 116 IPR001611 GO:0005515
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla06g00166 Cla-Chr6:1892684 Cla10g00875 Cla-Chr10:20028784 3.17E-61 dispersed
Cla08g00308 Cla-Chr8:7302249 Cla10g00875 Cla-Chr10:20028784 0 dispersed
Cla09g01478 Cla-Chr9:28430394 Cla10g00875 Cla-Chr10:20028784 0 dispersed
Cla10g00875 Cla-Chr10:20028784 Cla11g00478 Cla-Chr11:5471599 0 dispersed
Cla10g00875 Cla-Chr10:20028784 Cla05g02357 Cla-Chr5:35159817 0 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
80853 PF00069 Pkinase 2.30E-44 CL0016 Cla PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla10g00875 K13416 - csv:101216389 1129.01