Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla10g00890 ATGGAGCACGATGACATCGACATGATTGGCTCCGACAACAACGACGCTGTGGAGTTAGACGACATGAAGAAGCGGTTGAAAGAGATGGAAGATGAAGCTGCTGCTCTACGTGAGATGCAGGCCAAGGTCGAGAAAGAAATGAGTTCTGTCCAAGGTCCTCTTTTGATCCAATGCAAGTTGAAAATGTTCAAGGAAATGTTTACATTTTGGAAGAAGGCGCATTTGGATCTCATGCAGAAAACTGGAGCTTATCCTGCAAGTGCTGCTGCAAGTCAAGCAAATAGAGAGGAGGTGGATTCACGGTCAGTGTTTGTTGGCAATGTTGACTACTCATGTACCCCAGAAGAAGTACAGCAACATTTCCAATCATGTGGAACTGTAAACAGAATCACTATTCGCACTGATAAGTTCGGGCAACCAAAGGGTTATGCATATGTTGAATTCGTTGAGCCAGAAGCTGTTCAAGAGGCTCTCCTTCTGAATGAATCAGAATTGCATGGTCGACAGCTAAAGGTAACTGCCAAGAGGACAAACATACCTGGGATGAAGCAATATCGTCCACGCCGATCCAATCCATTTATGGGTGCTCGATCCAGGAGCCCATATGTTGCTCCTTATTTCTTCTCACCATATGGATACGGGAAAGTCCCGAGGTTCAGAATGCCAACGCGTTACGGCCCCTACTATTGA 690 45.8 MEHDDIDMIGSDNNDAVELDDMKKRLKEMEDEAAALREMQAKVEKEMSSVQGPLLIQCKLKMFKEMFTFWKKAHLDLMQKTGAYPASAAASQANREEVDSRSVFVGNVDYSCTPEEVQQHFQSCGTVNRITIRTDKFGQPKGYAYVEFVEPEAVQEALLLNESELHGRQLKVTAKRTNIPGMKQYRPRRSNPFMGARSRSPYVAPYFFSPYGYGKVPRFRMPTRYGPYY 229
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 20651592 20659455 - ClCG10G009330.2 Cla10g00890 282549

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla10g00890 229 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 103 171 IPR000504 GO:0003723
Cla10g00890 229 SUPERFAMILY RNA-binding domain, RBD 90 199 IPR035979 GO:0003676
Cla10g00890 229 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 101 177 IPR000504 GO:0003723
Cla10g00890 229 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 4B/4H 78 225 - -
Cla10g00890 229 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 4B/4H 4 53 - -
Cla10g00890 229 CDD RRM_II_PABPs 102 173 - -
Cla10g00890 229 Gene3D - 95 181 IPR012677 -
Cla10g00890 229 Coils Coil 19 46 - -
Cla10g00890 229 PANTHER - 78 225 - -
Cla10g00890 229 PANTHER - 4 53 - -
Cla10g00890 229 SMART rrm1_1 102 173 IPR000504 GO:0003723
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla10g00890 K14396 PABPN1, PABP2; polyadenylate-binding protein 2 - csv:101213499 370.163
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla01g01822 Cla-Chr1:33149813 Cla10g00890 Cla-Chr10:20651592 5.87E-99 dispersed
Cla07g01642 Cla-Chr7:33709719 Cla10g00890 Cla-Chr10:20651592 6.24E-89 dispersed
Cla07g01657 Cla-Chr7:33847103 Cla10g00890 Cla-Chr10:20651592 1.71E-58 dispersed
Cla10g00890 Cla-Chr10:20651592 Cla10g01185 Cla-Chr10:26448351 4.58E-15 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g1018 . . . . . . . Bma12g00369 . . . . . . . . . . . . . . . . Cla10g00890 Cam10g0915 . Cco10g0911 Clacu10g0942 Cmu10g1729 Cre10g1101 . . . . . . . . . . . . . . . . . . Cmo16g00250 . . . . Cpe14g00191 . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000374 6 8 4 4 4 3 7 3 3 4 3 3 6 4 4 6 3 6 5 3 4 3 4 3 4 2 4 8 5 1 127
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla10g00890 Cla_Chr10 FPKM 0.0 0.0 4.531833 3.483987 0.113283 0.348153 0.0 7.490575 7.708414 7.167168