Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla10g00895 ATGGCTTTTACAAGCCTCTCTTTCCATTCTACAACACCCATTTCTCATCTTCAACGATGGAAAGACCTCCAAGCTTTTGCAGCCATCGACAACCATGTGAAACCCTATACCACAACGGTTCTTGGTCCTGCTTCCAAAGTCCTCTCCATCATCAAACCTTCTAAACTCTATCTAACCACCAACCGCTTCGTCCGAGATGGAGCTATCAGATCTTCAAATTCTAATGTCGATGTCGATGTTACCATTGCCAACGATACCATCTTTGGCATCAATGGCCAGCCAATATTTTCGGTTGATGAGGCTGACTTGGACCGTCCGACGGAAGGGTTTTCATCCATTGAGGAAGCTATTGAAGATGTTCGGAAGGGAAAGATGGTGGTGGTTGTTGACGATGAAGATCGAGAAAACGAAGGAGATCTTATAATGGCGGCTGAGGCGGTGACGACAGAGGCGATGGCTTTCATTGTAAAGCATGGAACGGGGATTGTTTGTGTGGGGATGAAAGGAGAAGATTTAGAGAGGCTACAGATTCCATTAATGGTGGATCACAAGGATAACCAAGAAATGCTCTCTACTGCTTTTACTATCACTGTGGATGGAAGAGAGGGCACAACGACGGGAGTTTCAGCGGAGGATAGGGTGGCGACGGTGGTGGCATTAGCATCAAAACACTCAATACCATATGATTTTAAACGACCGGGTCATATCTTTCCCCTCAAATATAGAGAAGGAGGGGTTTTGAGAAGGCCTGGCCACACGGAAGCCTCCGTCGATCTAGCAGAGCTTGCTGGACTCTTTCCCGCCGGAATTCTCTGTGAGATCGTCGACGACGACGATGGCTCCATGGCTAGGCTCCCAAAGCTTCGCCAGTTTGCTCAACATCATAGCCTCAAAATTATCTCCATTGCTGACTTGATCAGGTATAGGAGAAAGAGGGAGAAATTAATTGAGCGCATTGGAGATCCTACAAGGATTCCGACTTCATGGGGACCATTCAATGCATACTGTTACAAGTCTACATTAGATGGCATGGAACATATCGCAATGGTTAAGGGTAATATTGGTGATGGCGAAGAGATCTTAGTGAGGGTGCACTCAGAATGCTTGACAGGAGACATATTTGGATCAGCAAGATGTGACTGTGGAAAGCAACTAGGTTTGGCAATGCGAAAGATTGAGGAAGGTGAGAAAGGAGTGTTGGTTTATCTTAGAGGCCAAGAAGGAAGAGGCATTGGTTTGGGCAATAAGCTTCTTGCATATAATTTACAAGATGCTGGTAGAGACACTGTTCAAGCTAATCAAGATTTGGGATTGCCTGTTGATTCTAGAGATTATACCCTCGCTGCACAAATTATAAAGGATCTTGGGGTGAGAACAATGAGGCTAATGACAAATAACCCAGCAAAGTACATGGGGCTAAAGGGGTATGGGTTGGCAATTTCAGGCAGAGTTCCTCTTGTAACCCCAATTACAAAGGAAAATAAAAGATACCTTGAGACTAAGAGAGCCAAAATGGGTCATGACTATGGCTTAGAATTCAATGGTGTGTTAAGTGCTCTAATGAATGTCAATAAAAAATAA 1581 44.66 MAFTSLSFHSTTPISHLQRWKDLQAFAAIDNHVKPYTTTVLGPASKVLSIIKPSKLYLTTNRFVRDGAIRSSNSNVDVDVTIANDTIFGINGQPIFSVDEADLDRPTEGFSSIEEAIEDVRKGKMVVVVDDEDRENEGDLIMAAEAVTTEAMAFIVKHGTGIVCVGMKGEDLERLQIPLMVDHKDNQEMLSTAFTITVDGREGTTTGVSAEDRVATVVALASKHSIPYDFKRPGHIFPLKYREGGVLRRPGHTEASVDLAELAGLFPAGILCEIVDDDDGSMARLPKLRQFAQHHSLKIISIADLIRYRRKREKLIERIGDPTRIPTSWGPFNAYCYKSTLDGMEHIAMVKGNIGDGEEILVRVHSECLTGDIFGSARCDCGKQLGLAMRKIEEGEKGVLVYLRGQEGRGIGLGNKLLAYNLQDAGRDTVQANQDLGLPVDSRDYTLAAQIIKDLGVRTMRLMTNNPAKYMGLKGYGLAISGRVPLVTPITKENKRYLETKRAKMGHDYGLEFNGVLSALMNVNKK 526
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 20898104 20904977 + ClCG10G009370.2 Cla10g00895 282554

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla10g00895 526 Gene3D DHBP synthase 99 316 - -
Cla10g00895 526 CDD GTP_cyclohydro2 315 508 IPR000926 GO:0003935|GO:0009231
Cla10g00895 526 Pfam 3,4-dihydroxy-2-butanone 4-phosphate synthase 114 308 IPR000422 GO:0008686|GO:0009231
Cla10g00895 526 TIGRFAM ribB: 3,4-dihydroxy-2-butanone-4-phosphate synthase 110 309 IPR000422 GO:0008686|GO:0009231
Cla10g00895 526 Hamap Riboflavin biosynthesis protein RibBA [ribBA]. 109 507 IPR016299 GO:0009231
Cla10g00895 526 SUPERFAMILY RibA-like 316 487 IPR036144 -
Cla10g00895 526 PANTHER BIFUNCTIONAL RIBOFLAVIN BIOSYNTHESIS PROTEIN RIBA 1, CHLOROPLASTIC-LIKE ISOFORM X1 95 517 - -
Cla10g00895 526 Pfam GTP cyclohydrolase II 323 485 IPR032677 -
Cla10g00895 526 Gene3D GTP cyclohydrolase II 317 488 IPR036144 -
Cla10g00895 526 Hamap GTP cyclohydrolase-2 [ribA]. 314 511 IPR000926 GO:0003935|GO:0009231
Cla10g00895 526 Hamap 3,4-dihydroxy-2-butanone 4-phosphate synthase [ribB]. 108 313 IPR000422 GO:0008686|GO:0009231
Cla10g00895 526 SUPERFAMILY YrdC/RibB 110 316 IPR017945 -
Cla10g00895 526 TIGRFAM ribA: GTP cyclohydrolase II 323 507 IPR000926 GO:0003935|GO:0009231
Cla10g00895 526 PANTHER GTP CYCLOHYDROLASE II-RELATED 95 517 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla10g00895 K14652 ribBA; 3,4-dihydroxy 2-butanone 4-phosphate synthase / GTP cyclohydrolase II [EC:4.1.99.12 3.5.4.25] - csv:101222456 728.013
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla10g00895 Cla-Chr10:20898104 Cla10g00896 Cla-Chr10:21060182 0 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g978 . . . . . . . . . . . . . . . . . . . . . . . . Cla10g00895 Cam10g0919 Cec10g0957 Cco10g0917 Clacu10g0948 Cmu10g1733 Cre10g1109 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000665 2 1 3 4 3 3 2 3 3 3 3 3 4 3 3 3 3 5 3 3 3 3 3 4 4 3 2 7 7 3 99
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla10g00895 Cla_Chr10 FPKM 15.417912 17.362165 13.529046 15.703432 6.370286 5.919091 7.953036 8.551567 8.325371 6.993346