Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla10g00905 ATGGTGATGGCCAGCGTTAAATCCATTGCTGATACACCCAACTTAACTTCCATTCCTTCCTCTTTCATCTTCGCCACCGACGACGACGACTGTAACGATGATGTCACCACCGATGATGCCCCGCAAGGCTCGGAAGATTCGATTCCCATCGTTGATTTTTCTCTCCTCATCAATGGTACTCCCCATCAACGAGCCAAAGTCGTGAATGAACTCGGGAAGGCCTGCGAGGATTGGGGCTTCTTCATGGTGGTGAATCATGGAGTGGGGGAGAAGTTGATGAAGGAGATGGTGGAAATTTGCAGAGAATTTTTTGATCTAAAAGAGGAAGAGAAGAGAGAGTATGAAACAAAGCATGTGCTTGACCCCATTAGATATGGCACCAGCTTCAATCCTAAGGTGGAGAAGGTCTTCTTTTGGAGAGATTATTTGAAAATCATGGTTCATCCCAAGTTTCACTCCCCAACTAGACCTACAAGATTCAGAGAGATCTTGGAAGAGTATTGCACAAGAATTAGAGAAATGACAAGAGAATTAGTGAGAGGAATCTCAGAGAGCTTGGGATTGGAAGAGTGTTGTTTGGAGAAAGCAGCAGATCTTGAGTCAAGTTCAATACTATTTGCAGCAAATTTGTATCCTTCATGTCCACAGCCAGAGCTTGCAAGGGGTTTACCATCTCATTCTGATCAATGCCTTCTCACTATTCTTCTTCAAAACCAAATTGCTGGCCTTCAAATCTTACACCATCATAAATGGCTGAATGTCAATCCTATTCCCAACTCATTACTTGTTAATGTTGCTGATCAACTTGAGATCTTGAGCAATGGGAAGTACAAGAGCGTTTTGCACAGAGCAATGGTGAATGATAAGGCCACACGGATTTCAATAGCAATGGCAGTTGGGCCATCACCTGAAACAGTGGTTGGTCCTGCACCTCAATTGGTAAATAAACACACCAATCATCCTCCTTTGTTTAAGAACATCAAATACAAAGATTATATGGACATTATGCAAGCTAACAAACTCCATGGGAAATCTACCTTGGATCGTATTCGTTTGCACCTTTGA 1065 42.82 MVMASVKSIADTPNLTSIPSSFIFATDDDDCNDDVTTDDAPQGSEDSIPIVDFSLLINGTPHQRAKVVNELGKACEDWGFFMVVNHGVGEKLMKEMVEICREFFDLKEEEKREYETKHVLDPIRYGTSFNPKVEKVFFWRDYLKIMVHPKFHSPTRPTRFREILEEYCTRIREMTRELVRGISESLGLEECCLEKAADLESSSILFAANLYPSCPQPELARGLPSHSDQCLLTILLQNQIAGLQILHHHKWLNVNPIPNSLLVNVADQLEILSNGKYKSVLHRAMVNDKATRISIAMAVGPSPETVVGPAPQLVNKHTNHPPLFKNIKYKDYMDIMQANKLHGKSTLDRIRLHL 354
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 21614492 21617527 - ClCG10G009480.1 Cla10g00905 282564

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla10g00905 354 Pfam 2OG-Fe(II) oxygenase superfamily 208 297 IPR044861 -
Cla10g00905 354 Gene3D - 1 340 IPR027443 -
Cla10g00905 354 PANTHER OXIDOREDUCTASE, 2OG-FE II OXYGENASE FAMILY PROTEIN 14 336 - -
Cla10g00905 354 ProSiteProfiles Fe(2+) 2-oxoglutarate dioxygenase domain profile. 200 301 IPR005123 -
Cla10g00905 354 SUPERFAMILY Clavaminate synthase-like 5 343 - -
Cla10g00905 354 PANTHER FLAVONOL SYNTHASE/FLAVANONE 3-HYDROXYLASE 14 336 - -
Cla10g00905 354 Pfam non-haem dioxygenase in morphine synthesis N-terminal 48 155 IPR026992 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla10g00905 - - - csv:101221281 587.03
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla10g00905 Cla-Chr10:21614492 Cla10g01870 Cla-Chr10:34607056 4.33E-72 dispersed
Cla10g00905 Cla-Chr10:21614492 Cla07g01663 Cla-Chr7:33906518 5.62E-76 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g975 . . . . . . . . . . . . . . . . . . . . . . . . Cla10g00905 Cam10g0930 Cec10g0971 Cco10g0929 Clacu10g0955 Cmu10g1739 Cre10g1113 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003038 0 2 2 2 1 1 1 1 1 1 1 1 1 1 2 0 1 4 1 1 1 3 2 3 3 2 4 3 1 5 52
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla10g00905 Cla_Chr10 FPKM 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0