Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla10g00921 ATGACAAGACAAAAAATCCAGATAAAGAAAATAGACAACATAGCAGCAAGGCAAGTGACATTTTCAAAGAGGAGAAGAGGACTATTCAAAAAAGCTCATGAACTTGCAACTCTCTGTGATGCTGATATTGCTCTCATTGTTTTTTCTGCTTCTGGAAAGCTTTTTGATTATTCCAGCTCAAGCATGCTGGAGTTATTGAGAAGACATAATATGCTACCAGAGTTGAGTAACTTTAGTCAACCTCCATCTCAGTTGGAAAAGAGTGCCCATGCTAAATTGACTGAGGAATTTGCAGCCAAGACCAAAGAACTTAGGCATATGAAGGGAGAGGAGCTTCAAGGGCTTGGAATAGAAGAATTAAAGAAATTGGAGAAATTGCTTGAGATTGGTTTGAATCGTGTAGTAGAGACCAAGGATGAAAAGTTTCTTAAAGAGATTGGTGCTGTGAAGGAGAAGGAAGCTTTGCTAATGGAAGAGAATCAGAGACTGAGGAATAAAGTGAGAGCTTTCTTCTTAGCTAATTCTCTAATTCTCTTTATGGAAACTTTGAATAGAGATCAGCAAGAAGAACAAGCAGTGGTTGTTATTGGTGGAAATTCTTTGGGGTCAAAGTCAAACACCACCAACAGCAGCTCCTCACCAAACCCTAATTCTCAAGATTATGATGACATTTCTCTTAAATTGGGGATGTTCTCTCCATCCGAGAATAACATTAAGAATCTATTTGAAGTGACTTTTAGGTGCTTAAAAAGGAGTATGCAAGGAGTTGTTTAG 774 38.11 MTRQKIQIKKIDNIAARQVTFSKRRRGLFKKAHELATLCDADIALIVFSASGKLFDYSSSSMLELLRRHNMLPELSNFSQPPSQLEKSAHAKLTEEFAAKTKELRHMKGEELQGLGIEELKKLEKLLEIGLNRVVETKDEKFLKEIGAVKEKEALLMEENQRLRNKVRAFFLANSLILFMETLNRDQQEEQAVVVIGGNSLGSKSNTTNSSSSPNPNSQDYDDISLKLGMFSPSENNIKNLFEVTFRCLKRSMQGVV 257
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 21905135 21911124 + ClCG10G009620.1 Cla10g00921 282580
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla10g00921 257 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Cla10g00921 257 ProSiteProfiles K-box domain profile. 83 173 IPR002487 GO:0003700|GO:0005634|GO:0006355
Cla10g00921 257 Coils Coil 146 166 - -
Cla10g00921 257 Gene3D - 15 104 IPR036879 GO:0003677|GO:0046983
Cla10g00921 257 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 228 - -
Cla10g00921 257 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Cla10g00921 257 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Cla10g00921 257 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Cla10g00921 257 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Cla10g00921 257 PANTHER MADS-BOX PROTEIN AGL24-LIKE ISOFORM X1 1 228 - -
Cla10g00921 257 Pfam K-box region 87 167 IPR002487 GO:0003700|GO:0005634|GO:0006355
Cla10g00921 257 Coils Coil 120 140 - -
Cla10g00921 257 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Cla10g00921 257 CDD MADS_MEF2_like 3 69 IPR033896 GO:0000977|GO:0045944
Cla10g00921 257 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Cla10g00921 257 SUPERFAMILY SRF-like 2 82 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla09g01571 Cla-Chr9:31214768 Cla10g00921 Cla-Chr10:21905135 4.81E-53 dispersed
Cla10g00921 Cla-Chr10:21905135 Cla08g01165 Cla-Chr8:24480113 4.14E-54 dispersed
Cla01g01019 Cla-Chr1:15608734 Cla10g00921 Cla-Chr10:21905135 1.23E-10 transposed
Cla10g01733 Cla-Chr10:33142285 Cla10g00921 Cla-Chr10:21905135 4.80E-06 transposed
Cla01g01797 Cla-Chr1:32894288 Cla10g00921 Cla-Chr10:21905135 4.43E-26 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
61867 PF01486 K-box 4.40E-16 No_clan Cla TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla10g00921 - - csv:101223132 306.99