Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cla10g00921 | ATGACAAGACAAAAAATCCAGATAAAGAAAATAGACAACATAGCAGCAAGGCAAGTGACATTTTCAAAGAGGAGAAGAGGACTATTCAAAAAAGCTCATGAACTTGCAACTCTCTGTGATGCTGATATTGCTCTCATTGTTTTTTCTGCTTCTGGAAAGCTTTTTGATTATTCCAGCTCAAGCATGCTGGAGTTATTGAGAAGACATAATATGCTACCAGAGTTGAGTAACTTTAGTCAACCTCCATCTCAGTTGGAAAAGAGTGCCCATGCTAAATTGACTGAGGAATTTGCAGCCAAGACCAAAGAACTTAGGCATATGAAGGGAGAGGAGCTTCAAGGGCTTGGAATAGAAGAATTAAAGAAATTGGAGAAATTGCTTGAGATTGGTTTGAATCGTGTAGTAGAGACCAAGGATGAAAAGTTTCTTAAAGAGATTGGTGCTGTGAAGGAGAAGGAAGCTTTGCTAATGGAAGAGAATCAGAGACTGAGGAATAAAGTGAGAGCTTTCTTCTTAGCTAATTCTCTAATTCTCTTTATGGAAACTTTGAATAGAGATCAGCAAGAAGAACAAGCAGTGGTTGTTATTGGTGGAAATTCTTTGGGGTCAAAGTCAAACACCACCAACAGCAGCTCCTCACCAAACCCTAATTCTCAAGATTATGATGACATTTCTCTTAAATTGGGGATGTTCTCTCCATCCGAGAATAACATTAAGAATCTATTTGAAGTGACTTTTAGGTGCTTAAAAAGGAGTATGCAAGGAGTTGTTTAG | 774 | 38.11 | MTRQKIQIKKIDNIAARQVTFSKRRRGLFKKAHELATLCDADIALIVFSASGKLFDYSSSSMLELLRRHNMLPELSNFSQPPSQLEKSAHAKLTEEFAAKTKELRHMKGEELQGLGIEELKKLEKLLEIGLNRVVETKDEKFLKEIGAVKEKEALLMEENQRLRNKVRAFFLANSLILFMETLNRDQQEEQAVVVIGGNSLGSKSNTTNSSSSPNPNSQDYDDISLKLGMFSPSENNIKNLFEVTFRCLKRSMQGVV | 257 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
10 | 21905135 | 21911124 | + | ClCG10G009620.1 | Cla10g00921 | 282580 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cla10g00921 | 257 | ProSitePatterns | MADS-box domain signature. | 3 | 57 | IPR002100 | GO:0003677|GO:0046983 | |
Cla10g00921 | 257 | ProSiteProfiles | K-box domain profile. | 83 | 173 | IPR002487 | GO:0003700|GO:0005634|GO:0006355 | |
Cla10g00921 | 257 | Coils | Coil | 146 | 166 | - | - | |
Cla10g00921 | 257 | Gene3D | - | 15 | 104 | IPR036879 | GO:0003677|GO:0046983 | |
Cla10g00921 | 257 | PANTHER | SERUM RESPONSE FACTOR HOMOLOG | 1 | 228 | - | - | |
Cla10g00921 | 257 | Pfam | SRF-type transcription factor (DNA-binding and dimerisation domain) | 10 | 57 | IPR002100 | GO:0003677|GO:0046983 | |
Cla10g00921 | 257 | PRINTS | MADS domain signature | 23 | 38 | IPR002100 | GO:0003677|GO:0046983 | |
Cla10g00921 | 257 | PRINTS | MADS domain signature | 38 | 59 | IPR002100 | GO:0003677|GO:0046983 | |
Cla10g00921 | 257 | PRINTS | MADS domain signature | 3 | 23 | IPR002100 | GO:0003677|GO:0046983 | |
Cla10g00921 | 257 | PANTHER | MADS-BOX PROTEIN AGL24-LIKE ISOFORM X1 | 1 | 228 | - | - | |
Cla10g00921 | 257 | Pfam | K-box region | 87 | 167 | IPR002487 | GO:0003700|GO:0005634|GO:0006355 | |
Cla10g00921 | 257 | Coils | Coil | 120 | 140 | - | - | |
Cla10g00921 | 257 | SMART | madsneu2 | 1 | 60 | IPR002100 | GO:0003677|GO:0046983 | |
Cla10g00921 | 257 | CDD | MADS_MEF2_like | 3 | 69 | IPR033896 | GO:0000977|GO:0045944 | |
Cla10g00921 | 257 | ProSiteProfiles | MADS-box domain profile. | 1 | 61 | IPR002100 | GO:0003677|GO:0046983 | |
Cla10g00921 | 257 | SUPERFAMILY | SRF-like | 2 | 82 | IPR036879 | GO:0003677|GO:0046983 |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cla09g01571 | Cla-Chr9:31214768 | Cla10g00921 | Cla-Chr10:21905135 | 4.81E-53 | dispersed | |
Cla10g00921 | Cla-Chr10:21905135 | Cla08g01165 | Cla-Chr8:24480113 | 4.14E-54 | dispersed | |
Cla01g01019 | Cla-Chr1:15608734 | Cla10g00921 | Cla-Chr10:21905135 | 1.23E-10 | transposed | |
Cla10g01733 | Cla-Chr10:33142285 | Cla10g00921 | Cla-Chr10:21905135 | 4.80E-06 | transposed | |
Cla01g01797 | Cla-Chr1:32894288 | Cla10g00921 | Cla-Chr10:21905135 | 4.43E-26 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
61867 | PF01486 | K-box | 4.40E-16 | No_clan | Cla | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cla10g00921 | - | - | csv:101223132 | 306.99 |