Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla10g00934 ATGACAATCAGTGGCACCGTCGCCTTTAATATTGATTTTCGGATTTTATCTTCCACTGGTCAAACTCATACTCCATTTCTTTCAAAACCCTTCAATTCTCTCCTCTCCCCCACCTCCATTTCCACCTCAATTCACCCTCCTCTTGCAGCTCGTTGCTCCTCCTCCTCCTCCTCCATCGCTTCTTTTGATATGGATAATGGTGCAGGTCTCAGTTTGTATCCATTACATCGGTGCAAAACAATTCACCTGGTTAGGCATTCAAGATGGCCTTCTTTCTTGGCTTTTGCTCGCAAATCAAGGGCTCTTATAAAACAATACATCCAGGTCAGGCATGCACAGGGGATCCACAATGTTGATGGAGATAAGAGTTATAAAGCATATATGCGTCCTGAGTTTTTTGATGCTCACATTACTCAGCTTGGATGGCAGCAGATTGATAATTTGCGTAAGCATGTTCATGAATCTGGTCTTTCCAGGAAGATTGATTTGGTTGTAACATCCCCTTTGCTCAGGACTCTACAAACCGCTGTTGGAGTATTTGGTGGCGAAGGCTATACAGCTGGAATGGACGTGCTGCCCCTAATGATTGCAAATGCAGGCAATAGTGCACGAGCTGCAATCTCAAGTCTAAACTGTCCACCTATTGCGGCTGTTGAGCTTTGTCGTGAACATTTGAAATCTACTTATCACCTCATATGCAAGGAGTTCATCCTTGTGATAAGAGGAGAAACATCAGTGACTATCAATTCCTCTTTCCGGCAGTTGATTTTTCACTGGCAAATAGAAAGTGATGAGGATGTATTGTGGAAGGCTGACGTTAGAGAGACAAAGGAAGAGCTGGCAGCCAGAGGATTGCAGTTCCTGAATTGGTTGTGGACAAGGAAGGAGAAGGAGATAGCCGTTGTTACACATAGTGGATTTTTATTTCATACCCTAACTGCTTTTGGAAATGACTGCCACCCTTTGGTGAAGAAGGAAATATGCAAACACTTTGCAAATTGCGAGCTTCGATCTATTGTCATAGTTGATAGAAGTATGGTCGGGTCGGATTCCTCTCCAACTAATTATCCTGGAAGGGTACCTCCGGGGCTGGATATCCCTAGTGATGCCGTGAATGACAACAGCATGAAGGAAGACAAACAACCAGTCGATTCCGAACCAAAGGAACATGAAAATATGTAA 1182 43.82 MTISGTVAFNIDFRILSSTGQTHTPFLSKPFNSLLSPTSISTSIHPPLAARCSSSSSSIASFDMDNGAGLSLYPLHRCKTIHLVRHSRWPSFLAFARKSRALIKQYIQVRHAQGIHNVDGDKSYKAYMRPEFFDAHITQLGWQQIDNLRKHVHESGLSRKIDLVVTSPLLRTLQTAVGVFGGEGYTAGMDVLPLMIANAGNSARAAISSLNCPPIAAVELCREHLKSTYHLICKEFILVIRGETSVTINSSFRQLIFHWQIESDEDVLWKADVRETKEELAARGLQFLNWLWTRKEKEIAVVTHSGFLFHTLTAFGNDCHPLVKKEICKHFANCELRSIVIVDRSMVGSDSSPTNYPGRVPPGLDIPSDAVNDNSMKEDKQPVDSEPKEHENM 393
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 22120504 22125489 + ClCG10G009760.1 Cla10g00934 282593

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla10g00934 393 CDD HP_PGM_like 109 176 IPR013078 -
Cla10g00934 393 MobiDBLite consensus disorder prediction 372 393 - -
Cla10g00934 393 PANTHER BROAD-SPECIFICITY PHOSPHATASE YOR283W-RELATED 64 87 - -
Cla10g00934 393 PANTHER BROAD-SPECIFICITY PHOSPHATASE YOR283W-RELATED 103 378 - -
Cla10g00934 393 SUPERFAMILY Phosphoglycerate mutase-like 109 343 IPR029033 -
Cla10g00934 393 MobiDBLite consensus disorder prediction 348 393 - -
Cla10g00934 393 PANTHER PHOSPHOGLYCERATE MUTASE-LIKE PROTEIN 1 103 378 - -
Cla10g00934 393 Gene3D - 103 365 IPR029033 -
Cla10g00934 393 PANTHER PHOSPHOGLYCERATE MUTASE-LIKE PROTEIN 1 64 87 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla10g00934 - - - cmo:103494848 589.726
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla10g00934 Cla-Chr10:22120504 Cla11g01447 Cla-Chr11:28085512 5.14E-85 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g871 . . . . . . . . . . . . . . . . . . . . . . . . Cla10g00934 . . Cco10g0952 Clacu10g0980 Cmu10g1765 Cre10g1138 Cone12ag1013 Cone8ag1040 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Cme07g02229
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000410 2 5 1 2 2 0 4 4 2 4 2 4 4 4 4 4 4 4 3 4 4 3 3 3 3 2 5 16 9 2 113
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla10g00934 Cla_Chr10 FPKM 19.299978 22.819212 30.048519 31.122114 16.132053 16.081783 17.180315 30.23077 28.25894 28.9942