Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla10g00935 ATGGCTTCCGCCGTCTTAGCTAACCGAAACGAAACCAATTGGCCGCAGCCGAGGGGCAACGGTCGCGGTACGGAAGAAGGATTCATGGGTAAAGTACCTTTTTCAAACCCTAACCCTAAATTTAACAAGAAACAGTTTCACGGCGAGATGAATGGTTTCCAGATGGATGATTCTCCGGCTGTGACTCAATCAGCGTCAGATGATGCCTCGTCGATTAATCATCATCGCAGATTGTCCAACGGCATCGATTTTAGTCAATACGTGAGCTTCAACGTTTCATCGTGTTCGAGGAAGGAGCTGATCGAGCTGAAAACAAAGTTAATTTCCGAGCTAGAACAGATTCGGCAATTGAAAAGTCGCATCAATTCAGGTGAACTACATTCCAGACCAACACACCAGAAAAAATCGTCAAAAACCTCAGGAACCAAGCGGCCTTTGCCAACGTCGAGCAACGGTATGGAGTTGAAGCGGTCTAATTCAGAAAACGGAAATCTGATGAAGACTTGCTCGCAGATTTTGACAAAACTCATGAAGCACAAACATGGCTGGATCTTCAACAAGCCGGTCGATGTGGTTGGGATGGGCCTTCACGATTACTATGACATCGTCAAGCGTCCTATGGATTTAGGATCCGTGAAAGCCAAGTTGAGCAAAGATGCATATGAATCACCGTTCGATTTTGCTTCCGACGTGAGGTTGACCTTCAAGAACGCGATGACCTACAATCCCAAGGGCCACGATGTGCACGCCATGGCAGAACAATTACTAATAAGATTTGAGGAATTGTTTCGACCTATGGGTGAACTGCTCGAAGAAGAAGATCGGCGGTTCCGTGGCTACCAGGAAGAGTTGCCAGCGAGTTCATGGAATCACTCAGAGGCTGAAAGAACGGTGAAGAAGGATAATACCCAGAAGCAAATTGTGAAGAAGACAGAGCCAATGAAAGCTCCGTCAAGCTCTTCTAATCCGCCTATGATGCAGTCGCCTGTTAAAACTCCCTCACCTCTACGAGCACCGCCTGTAAAGCCGTTGAAGCAGCCGAAACCAAGAGCTAAAGATCCTAATAAGAGAGAAATGACTCTTGAAGAGAAGCACAAGTTGGGAATTGGTTTGCAGAGTTTGCCACCAGAGAAAATGGAACAAGTAGTGCAAATCATAAAGAAGAGAAATGGTCACTTGAAACAGGATGGGGATGAGATTGAGCTCGACATTGAAGCTGTAGATACAGAAACACTTTGGGAGCTCGATCGATTAGTCACAAACTGGAAGAAGATGATGAGCAAGATCAAACGACAGGCTCTAATCACCGCAGCATCCATCAAACCCAATGGGGTAAATTACTTCGTTTTACCTATCCCTGAGAAAATTGAAGTGGGTTCCGAAACGAAAAAGCAACGGAGAGGGGAGGCTGGTGAGGAAGATGTGGACATCGGCGATGAAATGCCTGCAAGCAATTTTCCACCAGTGGAGATCGAGAAAGATGCCGGGGGAGGCCATGCTAGCAGTAGTTCCAGCGGCTCCAGTAGTTCAAGCAGCGATGATTCTTCCTCTTCCAGTGAGGTTAACGGGGTACTACCATCCTTGCAGATTCGGATTCCGAAGGCAGTTCTTCTGGGAGCGATTCCGATGACAATGCACAATGAAGCGGCGAGATTTGATGATGACGGGGGTCTGAAAAGAGATCCAAAATGGAGAGCTACAAATCCCTCTCGCGCTGCACGGAGAGAACCATTGGGCAGAGATTTGGCTGTAAAATCTCCAAAATGTGGAAATAGTGGCTTCACAATGGGTTAG 1794 46.93 MASAVLANRNETNWPQPRGNGRGTEEGFMGKVPFSNPNPKFNKKQFHGEMNGFQMDDSPAVTQSASDDASSINHHRRLSNGIDFSQYVSFNVSSCSRKELIELKTKLISELEQIRQLKSRINSGELHSRPTHQKKSSKTSGTKRPLPTSSNGMELKRSNSENGNLMKTCSQILTKLMKHKHGWIFNKPVDVVGMGLHDYYDIVKRPMDLGSVKAKLSKDAYESPFDFASDVRLTFKNAMTYNPKGHDVHAMAEQLLIRFEELFRPMGELLEEEDRRFRGYQEELPASSWNHSEAERTVKKDNTQKQIVKKTEPMKAPSSSSNPPMMQSPVKTPSPLRAPPVKPLKQPKPRAKDPNKREMTLEEKHKLGIGLQSLPPEKMEQVVQIIKKRNGHLKQDGDEIELDIEAVDTETLWELDRLVTNWKKMMSKIKRQALITAASIKPNGVNYFVLPIPEKIEVGSETKKQRRGEAGEEDVDIGDEMPASNFPPVEIEKDAGGGHASSSSSGSSSSSSDDSSSSSEVNGVLPSLQIRIPKAVLLGAIPMTMHNEAARFDDDGGLKRDPKWRATNPSRAARREPLGRDLAVKSPKCGNSGFTMG 597
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 22129447 22131840 + ClCG10G009770.2 Cla10g00935 282594

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla10g00935 597 MobiDBLite consensus disorder prediction 121 162 - -
Cla10g00935 597 MobiDBLite consensus disorder prediction 328 345 - -
Cla10g00935 597 SMART bromo_6 158 268 IPR001487 GO:0005515
Cla10g00935 597 MobiDBLite consensus disorder prediction 498 522 - -
Cla10g00935 597 PANTHER TRANSCRIPTION FACTOR GTE2 76 519 - -
Cla10g00935 597 MobiDBLite consensus disorder prediction 287 357 - -
Cla10g00935 597 MobiDBLite consensus disorder prediction 552 597 - -
Cla10g00935 597 ProSiteProfiles NET domain profile. 349 430 IPR027353 -
Cla10g00935 597 PANTHER OSJNBA0053K19.4 PROTEIN 76 519 - -
Cla10g00935 597 MobiDBLite consensus disorder prediction 293 308 - -
Cla10g00935 597 Pfam Bromodomain extra-terminal - transcription regulation 358 420 IPR027353 -
Cla10g00935 597 MobiDBLite consensus disorder prediction 552 582 - -
Cla10g00935 597 Gene3D - 123 283 IPR036427 GO:0005515
Cla10g00935 597 Gene3D - 352 429 IPR038336 -
Cla10g00935 597 SUPERFAMILY Bromodomain 165 272 IPR036427 GO:0005515
Cla10g00935 597 MobiDBLite consensus disorder prediction 460 522 - -
Cla10g00935 597 ProSiteProfiles Bromodomain profile. 177 249 IPR001487 GO:0005515
Cla10g00935 597 PRINTS Bromodomain signature 212 230 IPR001487 GO:0005515
Cla10g00935 597 PRINTS Bromodomain signature 196 212 IPR001487 GO:0005515
Cla10g00935 597 PRINTS Bromodomain signature 230 249 IPR001487 GO:0005515
Cla10g00935 597 PRINTS Bromodomain signature 180 193 IPR001487 GO:0005515
Cla10g00935 597 Pfam Bromodomain 169 253 IPR001487 GO:0005515
Cla10g00935 597 MobiDBLite consensus disorder prediction 1 24 - -
Cla10g00935 597 MobiDBLite consensus disorder prediction 1 19 - -
Cla10g00935 597 MobiDBLite consensus disorder prediction 140 162 - -
Cla10g00935 597 Coils Coil 97 120 - -
Cla10g00935 597 CDD Bromo_plant1 165 261 IPR037377 -
Cla10g00935 597 MobiDBLite consensus disorder prediction 313 327 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla10g00935 - - - csv:101216341 962.214
       

WGDs- Genes

Select Gene_1 Gene_2 Event_name
Cla09g01617 Cla10g00935 CCT
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla05g01390 Cla-Chr5:18724833 Cla10g00935 Cla-Chr10:22129447 2.37E-40 dispersed
Cla06g01728 Cla-Chr6:30817363 Cla10g00935 Cla-Chr10:22129447 7.28E-57 dispersed
Cla07g00947 Cla-Chr7:25663295 Cla10g00935 Cla-Chr10:22129447 1.87E-69 dispersed
Cla09g01617 Cla-Chr9:32364199 Cla10g00935 Cla-Chr10:22129447 0 dispersed
Cla09g01998 Cla-Chr9:37538340 Cla10g00935 Cla-Chr10:22129447 4.28E-32 dispersed
Cla10g00935 Cla-Chr10:22129447 Cla09g01015 Cla-Chr9:10672357 1.41E-08 dispersed
Cla10g00935 Cla-Chr10:22129447 Cla09g01060 Cla-Chr9:11229252 5.85E-77 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g868 . . . . . . Bma05g00620 . . Cmo11g01450 . . . . Sed08g2798 Cpe04g00359 . Bhi05g00968 Tan02g1117 Cmetu01g2617 Lac12g0105 Hepe02g0695 . . Cla10g00935 Cam10g0956 Cec10g0994 Cco10g0953 Clacu10g0981 Cmu10g1766 Cre10g1139 . Cone9ag1431 . . . Csa07g00643 . Cme01g00160 . Blo13g00200 Bda15g00483 . . Bpe05g00445 . Bma08g00032 . . . Cma11g01678 . Car11g01166 . . . . . . . . . . Cla09g01617 Cam09g1535 Cec09g1779 Cco09g1862 . . Cre01g0782 . . Chy01g00168 .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001096 3 2 3 3 1 2 4 2 2 2 2 2 4 2 2 4 2 4 4 2 2 2 2 2 2 2 2 8 5 1 80
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla10g00935 Cla_Chr10 FPKM 47.853046 57.796688 39.381912 34.683029 28.81502 26.695183 25.502018 34.872295 36.598923 32.767014