Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla10g00937 ATGGCCTTTGACAAGGCTGTGAAGAACAGTTTGCTTCAATTAGTTAGTGATGGGGTTTTTGATCTGTGGTGGTATTTGAAATTCCAGAAAAAATACATGGAGCTTGCTAATGCGGAGCCTGTTGCTAATGGAGAATTGGATGAAATGGAAAGGGAACCTTCAGCAAGGCTTCTTTTGCGGGAGGCTGGTCTGTCCCGTACGCATTTTCCGGGCATGGTGAGGAAGAGAGCTTACATATTTGATGGAAACGGCAATTACTATAACAAGGAATGGGATCTTACTGAGGGTAGGGGAAAGGAATTCTGTTGGTATCATGTAGAACTTCCAAAAGGAAATCAAAAACTGGCGCAATCTGCTCAATATCTCATTGATGTTCTTTGCCCACCTTTGAAACTTCAAGATATTCTCTCTCTTGTAAGCAATGGACCTTTTTGTGGACATGTTGATGGGGCTCTTGTCTTTAGAGTCAATTCACCTGGCCCTGCATCTAGTGATTTTACATTCAGAATTGCTGCTAGAATTACTGAAAATTCTGTCATCACCATGTCTTTGGGCCGTGTTCCGAGATTAGGATTCTCACCGGTCGGTCAGTCTCTTCTCTCAGAGGTTCCTAGTGTGGAGACGCCCTCTCACTTTAGAGGTGAGCAGAGAGAAAGTGGGGGCATCGTGATTAGGGAGCATGTTCTCGAATTCTTGTTGACAATGAATCATTCGGAGGAGGCTGACAATCCTGTGCCAGCATCCCTTTCAAATCTGGTTGTTCATATTATTGACACACATATGGATCACCTTCAAGATGTTGTGACTAAGCTTGAGATTGAGTTGGATTCTGTGGAGCTTGAAATGGATAAAGGTGGATTTGCCTTAAAAAAACAAATGCTTGATGACCGAAGATTCCCCAAAATGAACCTTAATTTGCAGCGGCTCCTGCAGGTGATTGCACATGGGGAACAAGTCTTTCCACGAGTGAAAGAAAAGTGTTCTTCTAAACATTGGTTTGCCAGTGAAGACATCAGCGCGCTTGAGGAACTAATTGGACGACTAAGACGGTTAAAAGAGAATGTGGGATTTATAGCAAACCGTGTCACTGCTATTCAGACTGGTCTCGATAGCTGGCAAGCCGAACAAATTAACAGGAAACTCTATTATCTATCATTTCTTTCCATCATATTCTTACCCTTGTCCGTCATTACTGGAGTATTTGGCATGAATGTTGGTGGAGTACCATGGACCGAGCAGAGAAATCCCGAGTTGAAAGAGGGATTTCGTAATGTGATGTTTCTCTGCGTTGTAATGCTACTACTGGTGCTGCTCTGCTTCAGTTTCCCTGCTCTTTACACCTACTTAGCGACATGGAATCGGCGTAGAAAGATGAGAAAGAGCTGGTCTCTCAACAGAAAGTCTTTTCTGAAGAGAACTGTGAGAAATGGGGCTGAAGACAGGGGAGGAGGCTATCTTCGGATTTGA 1467 43.63 MAFDKAVKNSLLQLVSDGVFDLWWYLKFQKKYMELANAEPVANGELDEMEREPSARLLLREAGLSRTHFPGMVRKRAYIFDGNGNYYNKEWDLTEGRGKEFCWYHVELPKGNQKLAQSAQYLIDVLCPPLKLQDILSLVSNGPFCGHVDGALVFRVNSPGPASSDFTFRIAARITENSVITMSLGRVPRLGFSPVGQSLLSEVPSVETPSHFRGEQRESGGIVIREHVLEFLLTMNHSEEADNPVPASLSNLVVHIIDTHMDHLQDVVTKLEIELDSVELEMDKGGFALKKQMLDDRRFPKMNLNLQRLLQVIAHGEQVFPRVKEKCSSKHWFASEDISALEELIGRLRRLKENVGFIANRVTAIQTGLDSWQAEQINRKLYYLSFLSIIFLPLSVITGVFGMNVGGVPWTEQRNPELKEGFRNVMFLCVVMLLLVLLCFSFPALYTYLATWNRRRKMRKSWSLNRKSFLKRTVRNGAEDRGGGYLRI 488
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 22139219 22143113 - ClCG10G009790.1 Cla10g00937 282596

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla10g00937 488 Gene3D Magnesium transport protein CorA, transmembrane region 246 372 - -
Cla10g00937 488 Coils Coil 341 361 - -
Cla10g00937 488 Pfam CorA-like Mg2+ transporter protein 241 439 IPR002523 GO:0016020|GO:0030001|GO:0046873|GO:0055085
Cla10g00937 488 Gene3D Magnesium transport protein CorA, transmembrane region 373 449 - -
Cla10g00937 488 Coils Coil 261 281 - -
Cla10g00937 488 SUPERFAMILY Magnesium transport protein CorA, transmembrane region 376 440 IPR045863 -
Cla10g00937 488 SUPERFAMILY CorA soluble domain-like 75 366 IPR045861 -
Cla10g00937 488 PANTHER OS08G0130000 PROTEIN 33 488 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla10g00937 - - - csv:101215859 868.226
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g862 Blo02g00897 . . . . . . . . . . . . . . . . . . . . . . . Cla10g00937 Cam10g0958 Cec10g0996 Cco10g0955 Clacu10g0982 Cmu10g1767 Cre10g1141 Cone12ag1008 . Cone3ag1072 Cone10ag1085 . . . . . . . . . . . . . Cmo04g00443 . . . . . . Cpe01g00372 . . . . . . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003243 2 4 0 2 1 1 2 1 1 1 1 0 2 1 1 2 0 1 2 1 1 1 1 1 1 2 1 6 9 1 50
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla10g00937 Cla_Chr10 FPKM 0.406863 0.0 2.286012 0.870214 0.0 0.0 1.243414 9.931376 9.244422 6.883235