Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla10g00943 ATGGGAAGAGGGAAGATTGTGATAAGAAGAATAGACAATTCAACAAGCAGGCAAGTGACTTTCTCAAAGAGAAGAAGTGGATTATTGAAAAAGGCTAGAGAGCTTTCAATTCTTTGTGATGCTGAAGTTGGATTGATCATTTTTTCGAGCACTGGCAAACTCTATGATTATTCCAGCTCCAGCATAAGATCGATTACTGATCGCTACAACAAGATGAAAGACGAGCAAAATCAGCTAATGAACTCTGTTTCAGAACTCCAGTTTTGGAAAAGAGAGGCAGCTGCTTTGAAGCAACAACTGCATTACTTGCAAGAATGTCACAGACAATTGATGGGTGAAGAACTATCTGGCCTGAGTGTCAAAGATCTACAAAATCTGGAAAGCCAGTTGGAAATGAGTTTGAAAGGTGTCCGTGTGAAGAAGGAAAAGATTTTAAGCGACGAAATTACTGAACTAAGACAGAAGGGAAATCATATGCATCAAGAAAATCTGGAACTCTACAAGAAATTAGATATGATTCGTAAGGAAAATGCAGAACTGCAAATGAAGGTCTATGGACCAATGGAAGTGGATAAAACGAGCAGTAGCTCAGTTCATCAATTCACTATCACCAATAGATACAGTATGCCTGCTCCCGTTCATCTACAGCTAAGACAGCCACAACCACAAAACAATGAAACACCAGCACCAGGGATAAAGCTGGGATTGCAACTGCAATAA 720 39.72 MGRGKIVIRRIDNSTSRQVTFSKRRSGLLKKARELSILCDAEVGLIIFSSTGKLYDYSSSSIRSITDRYNKMKDEQNQLMNSVSELQFWKREAAALKQQLHYLQECHRQLMGEELSGLSVKDLQNLESQLEMSLKGVRVKKEKILSDEITELRQKGNHMHQENLELYKKLDMIRKENAELQMKVYGPMEVDKTSSSSVHQFTITNRYSMPAPVHLQLRQPQPQNNETPAPGIKLGLQLQ 239
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 22268981 22283191 - ClCG10G009840.2 Cla10g00943 282602
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla10g00943 239 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Cla10g00943 239 SUPERFAMILY SRF-like 2 90 IPR036879 GO:0003677|GO:0046983
Cla10g00943 239 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Cla10g00943 239 PANTHER - 1 239 - -
Cla10g00943 239 Coils Coil 72 99 - -
Cla10g00943 239 Coils Coil 163 183 - -
Cla10g00943 239 CDD MADS_MEF2_like 2 76 IPR033896 GO:0000977|GO:0045944
Cla10g00943 239 Pfam K-box region 84 170 IPR002487 GO:0003700|GO:0005634|GO:0006355
Cla10g00943 239 Gene3D - 13 93 IPR036879 GO:0003677|GO:0046983
Cla10g00943 239 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Cla10g00943 239 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Cla10g00943 239 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Cla10g00943 239 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Cla10g00943 239 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 239 - -
Cla10g00943 239 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Cla10g00943 239 ProSiteProfiles K-box domain profile. 86 176 IPR002487 GO:0003700|GO:0005634|GO:0006355
Cla10g00943 239 MobiDBLite consensus disorder prediction 219 239 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla10g00943 Cla-Chr10:22268981 Cla06g00020 Cla-Chr6:251505 1.37E-43 dispersed
Cla11g01440 Cla-Chr11:28025592 Cla10g00943 Cla-Chr10:22268981 8.36E-33 dispersed
Cla04g00364 Cla-Chr4:13538667 Cla10g00943 Cla-Chr10:22268981 2.08E-38 transposed
Cla10g01155 Cla-Chr10:26113807 Cla10g00943 Cla-Chr10:22268981 1.80E-40 transposed
Cla11g01441 Cla-Chr11:28033207 Cla10g00943 Cla-Chr10:22268981 1.94E-49 transposed
Cla01g01782 Cla-Chr1:32765022 Cla10g00943 Cla-Chr10:22268981 4.06E-87 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
61868 PF01486 K-box 1.50E-25 No_clan Cla TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla10g00943 K09264 - csv:101203098 422.165