Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla10g00948 ATGGCGGTGACGGAGAGCCACCATCGTCATTACCAAGCGAAGCAAGTTCCTCTTTTCCCCTTACTCTCTCTTATCTGCTTCGTTTCCATTTTTCTCGCTCTCTCGGTATTCCACAAAACCTCCGTGTCTCCACGACCGCATCAGAGCTTCCAATTCATCGATGGCGTTAGATCCGGGAGATCCAAGGCTGCTGACGGTAGGTCGTGTGATTATTCTGATGGAAATTGGTTCCACGATCCGAATTTGAGAATCTCCAATTACGACCACACCTGCAAAGAGATATTCAAAGGCTGGAACTGCTTTGCGGCGAACAAATCCAATGCCCTCGAAATCACTAATTGGCATTGGAAGCCGAAGCAATGTGATCTTCCACATTTTGATCCGGTTTCTTTTCTTGAGAAGTTCAGAAATACTAACATTGGGTTTGTTGGCGACTCCTTAAATAGGAACATGTTTGTTTCACTTTTTTGTTCTCTGAAACGTGTGCCTGGTGAAGTAAAAAAGTGGCGTCCAGCTGGTGCGGATCGTGGATTTTCATTTCTGAAGTACAATCTTACCATTGCATATCATAGAACAAATATTCTGGCACGATATGGTTGGTGGTCAGTGAATGCAGACGGTGGTAAATTGGAATCTTTGGGATATAAAGGTGGATACAGAGTTGATGTTGACATTCCAGAAAGTTCATGGATAGAGGCCCCAAATTTCCATGACATTTTAGTCTTTAACACAGGACATTGGTGGTGGGCGCCTTCAAAATTTGACCCTGTAAAGTCACCCATGCTTTTTTTTGAAAAGGGTCTGCCTGTCATCCCTCCGGTACCTCCTGATGTTGGCTTCGACATGGTTTTGAAACATATGATATCATATGTGGAGCAAAGAATGCCACCTGGTAAAATCAAATTCTTCCGTACGCAATCACCCAGGCATTTTGAAGGAGGTGACTGGTACCAAGGTGGTTCTTGCCAGCGGCAGCAGCCTATATCTCCACAACAGGCCGAGGATCTGTTCTCGCTGACAAACAACGGAACCAATGTCGAGGTTCGACTCGTAAATGAGCACCTTTTCAAGGCCCTCAATGGAACTAGTTTCCATATTTTGAACATAACTCCCATGAGTGAGTTGAGAGCAGATGCACATCCTGCCTCAGCTGGTGGAAAGAAGCACGACGATTGTATGCACTGGTGCTTGCCGGGACTCACCGATACATGGAACGACTTATTCATACAGCATCTATACAACATTAGACGTTAG 1254 45.14 MAVTESHHRHYQAKQVPLFPLLSLICFVSIFLALSVFHKTSVSPRPHQSFQFIDGVRSGRSKAADGRSCDYSDGNWFHDPNLRISNYDHTCKEIFKGWNCFAANKSNALEITNWHWKPKQCDLPHFDPVSFLEKFRNTNIGFVGDSLNRNMFVSLFCSLKRVPGEVKKWRPAGADRGFSFLKYNLTIAYHRTNILARYGWWSVNADGGKLESLGYKGGYRVDVDIPESSWIEAPNFHDILVFNTGHWWWAPSKFDPVKSPMLFFEKGLPVIPPVPPDVGFDMVLKHMISYVEQRMPPGKIKFFRTQSPRHFEGGDWYQGGSCQRQQPISPQQAEDLFSLTNNGTNVEVRLVNEHLFKALNGTSFHILNITPMSELRADAHPASAGGKKHDDCMHWCLPGLTDTWNDLFIQHLYNIRR 417
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 22419328 22425551 + ClCG10G009880.2 Cla10g00948 282607

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla10g00948 417 Pfam PMR5 N terminal Domain 68 122 IPR025846 -
Cla10g00948 417 PANTHER PROTEIN TRICHOME BIREFRINGENCE-LIKE 9-RELATED 6 416 IPR029962 GO:0016413
Cla10g00948 417 PANTHER PROTEIN TRICHOME BIREFRINGENCE-LIKE 13 6 416 IPR029968 -
Cla10g00948 417 Pfam GDSL/SGNH-like Acyl-Esterase family found in Pmr5 and Cas1p 123 410 IPR026057 GO:0016740
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla10g00948 - - - csv:101217679 840.491
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla09g01609 Cla-Chr9:32244355 Cla10g00948 Cla-Chr10:22419328 5.07E-103 dispersed
Cla10g00948 Cla-Chr10:22419328 Cla04g01006 Cla-Chr4:25187717 1.62E-44 dispersed
Cla10g00948 Cla-Chr10:22419328 Cla10g01380 Cla-Chr10:28875758 7.32E-42 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g806 . . . . . . . . . . . . . . . . . . . . . . . . Cla10g00948 Cam10g0971 . Cco10g0965 Clacu10g0993 Cmu10g1776 Cre10g1150 . . . . . . . . . . . . . . . . Sed07g1156 Cmo04g00452 . . . . . . Cpe01g00379 Bhi11g01090 Tan01g0593 Cmetu07g0703 . . Mch10g0398 . . . . . . . . Lsi03g00996 . . Cme07g02222
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008103 1 1 1 2 1 1 2 1 1 1 1 1 2 1 1 2 1 1 2 1 1 1 1 1 1 0 1 2 1 1 35
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla10g00948 Cla_Chr10 FPKM 0.0 0.0 4.815649 3.45253 15.10259 14.356316 15.056112 0.0 0.0 0.0