Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla10g00956 ATGAGGAAGAGCAGAGGCAGGCAAAAGGTGGAGATGGTGAAGATGCCAAATGAGAGCAACCTTCAGGTCACCTTCTCGAAGCGTCGGTCCGGTCTCTTCAAGAAAGCTAGCGAGCTCTGCACGCTGTGTGGTGCTGAGATTGCCATCATCGTCTTCTCTCCCGGGAAGAAGGTTTTCTCCTTTGGCCACCCTTGCGTTGAGGCTCTCATCGAACGCTTTGTGACACGAAACCCTCCACCGAGCTCCGGTACGCTGCAGCTAATCGAAGCCCACAGGAATGCCAATGTTCGAGAACTGAATGCACAACTTACTCAAGTGCTGAACCAGCTTGAAATGGAGCGGAAGCGCAGTGAAGAGTTGAACAAACTGCGGAAGGCAAGCCAGGCACAATGTTGGTGGGAGCTTCCCATAGAAGAAATGGAAATGCATCAACTAGAACAACTTAAAGCATCGTTGGATGAGCTAAAGAAGAATGTCACACAACAAGCTGATCGGATTTTAATTCAGACTTCTAATGCCAATCCGCCGCCGCAGTTCTTCCCGACTCCACCAACACCGGCGAACCCTAGCCAGCAAGCTGGCCTTTTCGTCGTCGATCCGAAGAACATCATCTCCCATCTTCCCTACAACTATGGCTCCTATGGATCAAGAGGTTTCTTTTGA 663 50.53 MRKSRGRQKVEMVKMPNESNLQVTFSKRRSGLFKKASELCTLCGAEIAIIVFSPGKKVFSFGHPCVEALIERFVTRNPPPSSGTLQLIEAHRNANVRELNAQLTQVLNQLEMERKRSEELNKLRKASQAQCWWELPIEEMEMHQLEQLKASLDELKKNVTQQADRILIQTSNANPPPQFFPTPPTPANPSQQAGLFVVDPKNIISHLPYNYGSYGSRGFF 220
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 22531738 22532921 - ClCG10G009960.1 Cla10g00956 282615
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla10g00956 220 CDD MADS_MEF2_like 6 73 IPR033896 GO:0000977|GO:0045944
Cla10g00956 220 PANTHER MADS BOX PROTEIN 5 183 - -
Cla10g00956 220 SUPERFAMILY SRF-like 6 78 IPR036879 GO:0003677|GO:0046983
Cla10g00956 220 SMART madsneu2 5 64 IPR002100 GO:0003677|GO:0046983
Cla10g00956 220 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 16 61 IPR002100 GO:0003677|GO:0046983
Cla10g00956 220 PRINTS MADS domain signature 7 27 IPR002100 GO:0003677|GO:0046983
Cla10g00956 220 PRINTS MADS domain signature 27 42 IPR002100 GO:0003677|GO:0046983
Cla10g00956 220 PRINTS MADS domain signature 42 63 IPR002100 GO:0003677|GO:0046983
Cla10g00956 220 Gene3D - 83 175 - -
Cla10g00956 220 Gene3D - 17 81 IPR036879 GO:0003677|GO:0046983
Cla10g00956 220 Coils Coil 138 165 - -
Cla10g00956 220 ProSiteProfiles MADS-box domain profile. 5 65 IPR002100 GO:0003677|GO:0046983
Cla10g00956 220 Coils Coil 93 130 - -
Cla10g00956 220 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL62 5 183 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla03g00656 Cla-Chr3:7925064 Cla10g00956 Cla-Chr10:22531738 6.93E-36 dispersed
Cla06g00788 Cla-Chr6:10832017 Cla10g00956 Cla-Chr10:22531738 5.47E-40 dispersed
Cla10g00956 Cla-Chr10:22531738 Cla03g00684 Cla-Chr3:8285530 8.07E-18 dispersed
Cla10g00956 Cla-Chr10:22531738 Cla01g02388 Cla-Chr1:37523436 2.15E-47 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
61869 PF00319 SRF-TF 3.50E-24 No_clan Cla TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla10g00956 - - csv:101221957 393.66