Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla10g00956 ATGAGGAAGAGCAGAGGCAGGCAAAAGGTGGAGATGGTGAAGATGCCAAATGAGAGCAACCTTCAGGTCACCTTCTCGAAGCGTCGGTCCGGTCTCTTCAAGAAAGCTAGCGAGCTCTGCACGCTGTGTGGTGCTGAGATTGCCATCATCGTCTTCTCTCCCGGGAAGAAGGTTTTCTCCTTTGGCCACCCTTGCGTTGAGGCTCTCATCGAACGCTTTGTGACACGAAACCCTCCACCGAGCTCCGGTACGCTGCAGCTAATCGAAGCCCACAGGAATGCCAATGTTCGAGAACTGAATGCACAACTTACTCAAGTGCTGAACCAGCTTGAAATGGAGCGGAAGCGCAGTGAAGAGTTGAACAAACTGCGGAAGGCAAGCCAGGCACAATGTTGGTGGGAGCTTCCCATAGAAGAAATGGAAATGCATCAACTAGAACAACTTAAAGCATCGTTGGATGAGCTAAAGAAGAATGTCACACAACAAGCTGATCGGATTTTAATTCAGACTTCTAATGCCAATCCGCCGCCGCAGTTCTTCCCGACTCCACCAACACCGGCGAACCCTAGCCAGCAAGCTGGCCTTTTCGTCGTCGATCCGAAGAACATCATCTCCCATCTTCCCTACAACTATGGCTCCTATGGATCAAGAGGTTTCTTTTGA 663 50.53 MRKSRGRQKVEMVKMPNESNLQVTFSKRRSGLFKKASELCTLCGAEIAIIVFSPGKKVFSFGHPCVEALIERFVTRNPPPSSGTLQLIEAHRNANVRELNAQLTQVLNQLEMERKRSEELNKLRKASQAQCWWELPIEEMEMHQLEQLKASLDELKKNVTQQADRILIQTSNANPPPQFFPTPPTPANPSQQAGLFVVDPKNIISHLPYNYGSYGSRGFF 220
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 22531738 22532921 - ClCG10G009960.1 Cla10g00956 282615

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla10g00956 220 CDD MADS_MEF2_like 6 73 IPR033896 GO:0000977|GO:0045944
Cla10g00956 220 PANTHER MADS BOX PROTEIN 5 183 - -
Cla10g00956 220 SUPERFAMILY SRF-like 6 78 IPR036879 GO:0003677|GO:0046983
Cla10g00956 220 SMART madsneu2 5 64 IPR002100 GO:0003677|GO:0046983
Cla10g00956 220 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 16 61 IPR002100 GO:0003677|GO:0046983
Cla10g00956 220 PRINTS MADS domain signature 7 27 IPR002100 GO:0003677|GO:0046983
Cla10g00956 220 PRINTS MADS domain signature 27 42 IPR002100 GO:0003677|GO:0046983
Cla10g00956 220 PRINTS MADS domain signature 42 63 IPR002100 GO:0003677|GO:0046983
Cla10g00956 220 Gene3D - 83 175 - -
Cla10g00956 220 Gene3D - 17 81 IPR036879 GO:0003677|GO:0046983
Cla10g00956 220 Coils Coil 138 165 - -
Cla10g00956 220 ProSiteProfiles MADS-box domain profile. 5 65 IPR002100 GO:0003677|GO:0046983
Cla10g00956 220 Coils Coil 93 130 - -
Cla10g00956 220 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL62 5 183 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla10g00956 - - - csv:101221957 393.66
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla03g00656 Cla-Chr3:7925064 Cla10g00956 Cla-Chr10:22531738 6.93E-36 dispersed
Cla06g00788 Cla-Chr6:10832017 Cla10g00956 Cla-Chr10:22531738 5.47E-40 dispersed
Cla10g00956 Cla-Chr10:22531738 Cla03g00684 Cla-Chr3:8285530 8.07E-18 dispersed
Cla10g00956 Cla-Chr10:22531738 Cla01g02388 Cla-Chr1:37523436 2.15E-47 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g784 . . . . . Bpe12g00730 . . . . . . . . . . . . . . . . . . Cla10g00956 Cam10g0979 Cec10g1010 Cco10g0973 Clacu10g1001 Cmu10g1783 Cre10g1157 . . . . . . . . . . . . . . . . Sed14g1573 Cmo04g00457 . . . . . . Cpe01g00383 Bhi11g01095 Tan01g0599 Cmetu07g0995 . Hepe07g0389 Mch10g0403 . . . . . . . . Lsi03g01001 . . .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cla10g00956 . 1 165 Type I MADS-box Gene Family AT5G60440 61.9 1.7e-50 196.8
Cla07g00897 . 2 175 Type I MADS-box Gene Family AT1G77950 59.4 1.5e-52 203.4
Cla03g01710 . 1 163 Type I MADS-box Gene Family AT5G48670 64.4 7.1e-55 211.5
Cla01g01019 . 1 157 Type I MADS-box Gene Family AT5G48670 58.0 1.2e-46 184.1
Cla10g00956 . 1 165 Type I MADS-box Gene Family AT5G60440 61.9 1.7e-50 196.8
Cla07g00897 . 2 175 Type I MADS-box Gene Family AT1G77950 59.4 1.5e-52 203.4
Cla03g01710 . 1 163 Type I MADS-box Gene Family AT5G48670 64.4 7.1e-55 211.5
Cla01g01019 . 1 157 Type I MADS-box Gene Family AT5G48670 58.0 1.2e-46 184.1
Cla10g00956 . 1 165 Type I MADS-box Gene Family AT5G60440 61.9 1.7e-50 196.8
Cla03g01710 . 1 163 Type I MADS-box Gene Family AT5G48670 64.4 7.1e-55 211.5
Cla01g01019 . 1 157 Type I MADS-box Gene Family AT5G48670 58.0 1.2e-46 184.1
Cla07g00897 . 2 175 Type I MADS-box Gene Family AT1G77950 59.4 1.5e-52 203.4
Cla10g00956 . 1 165 Type I MADS-box Gene Family AT5G60440 61.9 1.7e-50 196.8
Cla03g01710 . 1 163 Type I MADS-box Gene Family AT5G48670 64.4 7.1e-55 211.5
Cla01g01019 . 1 157 Type I MADS-box Gene Family AT5G48670 58.0 1.2e-46 184.1
Cla07g00897 . 2 175 Type I MADS-box Gene Family AT1G77950 59.4 1.5e-52 203.4
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003994 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 4 1 1 1 1 1 1 1 1 2 2 1 7 42
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
61869 PF00319 SRF-TF 3.50E-24 No_clan Cla TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla10g00956 Cla_Chr10 FPKM 0.0 0.0 0.21991 0.218369 48.262829 53.032478 51.055271 0.0 0.0 0.0