Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla10g00957 ATGTCCCGTTCTCTCCTCCGAGCTTTTCCTTTATCCACCATTCGCCCCAAGCCTGCTCAATTTCTCCCCATCTTCCATCACATTTCCCATCTCCGTCTTGCCAAATCTGTTTCCAGAACTCAGAGACCTGTTTCCTCATTTTCCGCTTCCGCCACTCATCCGCCTTCCTCCACCGCCGAAACCATCGCTCCCTCTTCGAATTCTCACTCGCCTTTTAAAGACTCTCTTCAGTGGATCAATCGTACGGCGTTCTGTGGTGAATTGTCGGTTGACGATGTTGGGAAGCGGGTTCGGCTGTGTGGTTGGGTTGCTCTGCATAGGGTTCATGGTGGTCTGACGTTTCTCAATCTTAGAGACCACAGTGGTATTGTTCAGGTGACTACGCTTCCCAACGAGTTTCCAGATGCTCATTCGACTATTAACGACTTGCGGCTTGAGTATGTTGTTGCTGTAGAAGGCACTGTTCGGTCTCGGCCTGGTGATTCAGTTAATGTAAAAATGAAAACTGGCTTGATAGAGGTTGCTGCAGAGCATGTTCAAGTATTAAATTCTGTTGGATCAAAGTTGCCCTTTTTAGTTACAACTGCTGATGATGCAAAGGATTCTGCTAAAGAGGAAATTCGACTGAGGTACCGGTACCTTGATCTACGAAGGAAGCAAATGAATTTTAACATAATGCTTCGTCATAGAGTGGTGAAGCTCATTCGAAGATATTTAGAGGATGTACATGGTTTTGTGGAGATTGAGACGCCAATACTTTCTAGATCTACTCCAGAAGGTGCTCGGGATTATCTGGTGCCGTCTAGAGTTCAGCCAGGAACATTTTTTGCTTTGCCTCAAAGTCCACAGCTGTTTAAGCAAATGTTGATGCCAGGAACATTTTTTGCTTTGCCTCAAAGTCCACAGCTGTTTAAGCAAATGTTGATGGTGTCTGGTTTTGATAAATATTATCAAATAGCAAGGTGTTTCCGAGATGAAGACCTAAGAGCTGATAGACAACCTGAGTTTACGCAACTGGATATGGAATTAGCATTTACAACTTTTGAAGACATGTTGAGACTCAATGAAGATTTGATTAGAAAGGTATCTGATATTTTTGCAGGTTCTCCATTTAAGGTTTTTGCAGACGCCTTGTCTAGTGATGGAATCATCAAAGTGCTGTGTGTGCCCTCTGGTGCTAAAAGGTACTCAAACACAGCTCTTAAAAAGGGTGACATTTATATGGAGGCGATCAAATCTGGTGCAAAAGGATTACCTTTTCTGAAAGTTACAGACGATGGTGGCATTGAAGGGATTCTTGCCCTAGTATCAAGTTTGGATTCTGCAGGTAGAGAGGAATTTCTAAGTAGGTGCTCTGCTGGACCTGGTGATCTAGTCTTGTTTGCCGTGGGCCATCGAGTATTGGTTAATAAAACTCTAGATAGGCTTAGACTATATGTAGCTAATGACCTCAGTTTAGTCGACCATTCTAGGCATTCAATTTTGTGGGTGACTGATTTTCCCATGTTTGAATGGAATGATCTAGAGCAACGACTCGAGGCTTTGCACCACCCTTTCACAGCTCCAAACCCTGAAGACGTTGGTGATCTGCCCTCTGCTCGTGCCTTAGCTTATGATATGGTTTACAATGGAGTAGAGATTGGTGGAGGAAGTTTGAGAATTCACAAACGTGAAGTTCAAGAAAAGGTTTTGGAGATTGTGGGAATCTCTCCTGAACAGGCAGAAGCGAAGTTTGGTTATTTATTGGAGGCACTAGACATGGGTGCCCCGCCTCACGGGGGTATTGCTTATGGGTTGGACAGATTAGTCATGTTATTGGCAGAGGCAACTTCCATTAGGGATGTCATAGCTTTCCCAAAGACAACAACAGCACAATGTGCCCTCACAAGAGCTCCTTCAGAAGTGGATCCCCAACAACTCAAGGATTTATCATATCAGAACCAATAA 1947 44.02 MSRSLLRAFPLSTIRPKPAQFLPIFHHISHLRLAKSVSRTQRPVSSFSASATHPPSSTAETIAPSSNSHSPFKDSLQWINRTAFCGELSVDDVGKRVRLCGWVALHRVHGGLTFLNLRDHSGIVQVTTLPNEFPDAHSTINDLRLEYVVAVEGTVRSRPGDSVNVKMKTGLIEVAAEHVQVLNSVGSKLPFLVTTADDAKDSAKEEIRLRYRYLDLRRKQMNFNIMLRHRVVKLIRRYLEDVHGFVEIETPILSRSTPEGARDYLVPSRVQPGTFFALPQSPQLFKQMLMPGTFFALPQSPQLFKQMLMVSGFDKYYQIARCFRDEDLRADRQPEFTQLDMELAFTTFEDMLRLNEDLIRKVSDIFAGSPFKVFADALSSDGIIKVLCVPSGAKRYSNTALKKGDIYMEAIKSGAKGLPFLKVTDDGGIEGILALVSSLDSAGREEFLSRCSAGPGDLVLFAVGHRVLVNKTLDRLRLYVANDLSLVDHSRHSILWVTDFPMFEWNDLEQRLEALHHPFTAPNPEDVGDLPSARALAYDMVYNGVEIGGGSLRIHKREVQEKVLEIVGISPEQAEAKFGYLLEALDMGAPPHGGIAYGLDRLVMLLAEATSIRDVIAFPKTTTAQCALTRAPSEVDPQQLKDLSYQNQ 648
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 22538322 22554344 - ClCG10G009970.1 Cla10g00957 282616

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla10g00957 648 PRINTS Aspartyl-tRNA synthetase signature 582 596 IPR002312 GO:0000166|GO:0004812|GO:0005524|GO:0006418
Cla10g00957 648 PRINTS Aspartyl-tRNA synthetase signature 538 554 IPR002312 GO:0000166|GO:0004812|GO:0005524|GO:0006418
Cla10g00957 648 PRINTS Aspartyl-tRNA synthetase signature 314 327 IPR002312 GO:0000166|GO:0004812|GO:0005524|GO:0006418
Cla10g00957 648 PRINTS Aspartyl-tRNA synthetase signature 297 309 IPR002312 GO:0000166|GO:0004812|GO:0005524|GO:0006418
Cla10g00957 648 CDD AspRS_core 225 622 - -
Cla10g00957 648 CDD EcAspRS_like_N 81 221 - -
Cla10g00957 648 PANTHER ASPARTATE--TRNA LIGASE, MITOCHONDRIAL 369 645 IPR004524 GO:0005524|GO:0016874
Cla10g00957 648 PANTHER ASPARTATE--TRNA LIGASE, MITOCHONDRIAL 291 362 IPR004524 GO:0005524|GO:0016874
Cla10g00957 648 PANTHER ASPARTATE--TRNA LIGASE, MITOCHONDRIAL 61 292 IPR004524 GO:0005524|GO:0016874
Cla10g00957 648 Pfam OB-fold nucleic acid binding domain 97 173 IPR004365 GO:0003676
Cla10g00957 648 SUPERFAMILY Class II aaRS and biotin synthetases 201 292 IPR045864 -
Cla10g00957 648 ProSiteProfiles Aminoacyl-transfer RNA synthetases class-II family profile. 227 619 IPR006195 -
Cla10g00957 648 Gene3D - 73 185 IPR012340 -
Cla10g00957 648 Pfam GAD domain 374 473 IPR029351 -
Cla10g00957 648 PANTHER ASPARTYL/LYSYL-TRNA SYNTHETASE 369 645 - -
Cla10g00957 648 PANTHER ASPARTYL/LYSYL-TRNA SYNTHETASE 291 362 - -
Cla10g00957 648 SUPERFAMILY Nucleic acid-binding proteins 81 183 IPR012340 -
Cla10g00957 648 Pfam tRNA synthetases class II (D, K and N) 293 622 IPR004364 GO:0000166|GO:0004812|GO:0005524|GO:0006418
Cla10g00957 648 SUPERFAMILY Class II aaRS and biotin synthetases 291 621 IPR045864 -
Cla10g00957 648 Gene3D Bira Bifunctional Protein; Domain 2 293 400 IPR045864 -
Cla10g00957 648 Hamap Aspartate--tRNA(Asp/Asn) ligase [aspS]. 80 648 IPR004524 GO:0005524|GO:0016874
Cla10g00957 648 PANTHER ASPARTYL/LYSYL-TRNA SYNTHETASE 61 292 - -
Cla10g00957 648 Gene3D Bira Bifunctional Protein; Domain 2 194 292 IPR045864 -
Cla10g00957 648 Gene3D Bira Bifunctional Protein; Domain 2 467 648 IPR045864 -
Cla10g00957 648 MobiDBLite consensus disorder prediction 44 69 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla10g00957 K01876 DARS2, aspS; aspartyl-tRNA synthetase [EC:6.1.1.12] - csv:101202872 1113.98
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla10g00957 Cla-Chr10:22538322 Cla11g01172 Cla-Chr11:24547855 3.84E-14 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g777 . Blo03g00057 Bda06g01152 . Bpe07g00295 . . Bma12g00306 . . . . . . . . . . . . . . . . Cla10g00957 Cam10g0980 Cec10g1011 Cco10g0974 Clacu10g1002 Cmu10g1784 Cre10g1158 . . Cone3ag1050 Cone10ag1066 . . . . . . . . . . . . Sed07g1150 Cmo04g00458 Cmo16g00319 . . . . Cpe14g00249 Cpe01g00384 Bhi11g01096 Tan01g0600 Cmetu07g2217 . . Mch10g0404 . . . . . . . . Lsi03g01002 . . Cme07g02215
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009118 1 1 1 1 1 1 2 1 1 1 1 1 1 1 1 1 1 2 2 1 1 1 1 1 1 1 1 2 1 1 34
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla10g00957 Cla_Chr10 FPKM 241.908752 270.226044 0.607802 0.816289 0.863482 0.995145 1.119541 0.0 0.0 0.0