Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla10g00958 ATGGCGCTGCCGTCCAACAGGTCGTCTTCTCCGTCCATGCTCTCTGGAAGAACAAGCCCTAATTCTAGAAATTCCGAAATCAGCAACCCCGTTCGCCGGAGCTTCTCTGGTAACCCGTTTTCAAAGCCATCCATCGTCGCTAATCCAAGGGGCTTAAACCCTATCACTCCGGCGAATAGTCCATCTGATGATCCACGAAGGAACTCTGTGAGCAGAGAAAATTTATTTACTTCTCGCGACATCCCGGAGAAAGAAAATGGTAAGGATCAGAGTCCGAAACCTGTTCGAGTTCGTTCGCCGATGGTCGGAAAATCATCGAAGCATTTCATGTCTCCTACAATTTCCGCTGCCTCCAAGATTGCCGTCTCTCCAAAGAAGAAGATTCTAGGCGACCGGAACGAGCCAGTTCGGTCGTCTATTTCATTGTCTGGCATGAAGAGCTCTTCACTCAACCCGGTGAATCAAAGTTTGGAGGCATCAAAGGCACTTGAATCCGATGCCAACCCTCAAGTTCCTCCGGTTTCAAATTCAAAATCATCAAAAACAGTGAGATTTGGTGGTTTTGAGGTCATTTCTGATTCGTATGGTGATTTGAAATCCACTTACCAATACAATTTGAACCCGGAGGTGGTGACAATGGCAGTCGAAACAGATACGAAGTCCGAAATTGCTCTGGTTTCAAAATCCGCCACTGTAGTGGCACCTTCCAAATCATCTAATTCTGATTTCGAGGTAATCTCGATCTCAAACATCAATCTAGACTCTCCTCCGAGTAAGAGTAATTTCATTGAAGAAGTGGATTGTGTTAATCTTGACCCAAGTTTTAAAATCAGTCCAGTTTCTTCTCCAATTATAGCACCTCTAGATGCTGATCCATCAATCCCTCCTTATGACCCAAAAACTAATTATCTATCTCCAAGGCCACAGTTCCTCCATTACAAACCAAATCGAAGAATCAATCGGTACAAACTAGAAGGCAGACTTGAGGAAAAGCTCTTTTCCTTTGCCAATGTTTCCGAGTCCGAATTCATGGAGGAAACTGATTCTGAAGATTCACCGAAGGAATCCGATGAAGCTTCTTCCAATGGATCACAGATGGAAGAAGAAGAAGAAGAGGGGGAGATTAATGTCTCTGAACAAAGTCCTGCAGACGTTAAAAAGTCATCGAAGCTGTGCTTTTCAAGGATATTCAAGATCAGTTCTTTGCTTTTGATTCTGTTTACTGTTTTCTTATCAATTTGTATTGTGAATGTCCATGATCCAAATATCTTCAAAAGGCCAAGCTCGTTAACTATGGAGGATCCATCTGAAATTTTCGAGTTTGCAAAAACAAGTTTCAATGTGTTGGTTGGGAAACTTGAGGTTTGGCATGGGAATTCCATCTCTTTTATTTCTGATGTGGTTTTCAACTTCAGAGGAGGCCCGCCATTGATCCATTATCATAACCAGAGTGAGTTCTTCAATGGTGATTTCAACATGAATGAGCAGTGTCTTGCATCATCTCATCAGACTGTGTGGGAAGAAGAAAACAATTTGAATGTAACGGAAGCCATGAAGGATAGAGAAAATAACATTTCTGAAGAACCTATTGAGAAAGAATGTGAAGAAGAAGAAGGAGAATTACGACAAGAAATAGGCGTCGTAACTGTTGAAAGAGAATCTGAGAACGAAGAACAAGAACAGGGACAAGAAGACTTGTTGCTAGAGATTGAAACCATGAATATGAGAGAAATTATCATTGAGAATGCTGAAAGAGAATCTCAAAATGAAGAAGAGCTAGAAGAAGCATCATTTCAAGAAACTGTAGCCAATGCCAATGAAGAAGAGAATGAACTGAAGCTAGAAGAAGTATCGTTTCAAGAAACTGAAGCCAATGCCAATGAAGAAGAGAATGAGGAGGCTTTTGAAGAATCATTACAAGAAATCATTGAAGAGGCCTCAGCAAATTCAGCTTCTGGTGAACCTGAAGAAGAATACATCCAAGAGAAACCTGAGGAGAGTTTCAAAGTTTCTTCATCGTCTGATTTTAAATTTCATGATCAAATTGAACAAGCAGTAACAACAGGGGAAACAGAGGAAGAAAAGAATACAGAATTCCAATACCAGTCACCTCCCGTTTCTCCTCCATGTGAACATCAATCTGATTTTGAAGTAGAAAATGGCGGCAAAATTGTCGATCTCATTGGAACAGAAACAGGAATCTCTCGGGATTTCACACAGAACACAGCTATTATAATATCTGCTATACTGCTGGGTTTATCTCTTATAATACCTGCACGGCTGATTTATGCAAGAAAATCAGGCTCAAAACTACTATCATCATCGGAAGCCATTGCTGAAGAGCAAGAGGAGGAGCAGCCGTTGGTGAAAGAGAAGAAGATGAATCAGAGTCAAGTAGAAGAAGATGAAGAAGATGATATGGGTGTAGAATTTTGCCCTTCTGAAACGAGTAGTTTCCAATACAGCAGCATGAGAGAAGGAGAAACAAAAGCAGGGAAGAGATGGAGTGAAGTTCAGAGCCATAGCCATGGAAGGAAGAAGATGAGGAAGAATTCAAGAAGAGAATCAATGGCTTCTTCTTCTCTAGATGAATATTCAGTGTCCACTTCAGCTTCTCCATCTTATGGGAGTTTCACAACCTATGAGAAAATCCCAATCAAGCATGGAAATGGTGATGAAGAGATTGTGACTCCAGTCAGACGCTCTAGTAGAATTAGAAAGCAACACAATAATAGTTGA 2739 41.11 MALPSNRSSSPSMLSGRTSPNSRNSEISNPVRRSFSGNPFSKPSIVANPRGLNPITPANSPSDDPRRNSVSRENLFTSRDIPEKENGKDQSPKPVRVRSPMVGKSSKHFMSPTISAASKIAVSPKKKILGDRNEPVRSSISLSGMKSSSLNPVNQSLEASKALESDANPQVPPVSNSKSSKTVRFGGFEVISDSYGDLKSTYQYNLNPEVVTMAVETDTKSEIALVSKSATVVAPSKSSNSDFEVISISNINLDSPPSKSNFIEEVDCVNLDPSFKISPVSSPIIAPLDADPSIPPYDPKTNYLSPRPQFLHYKPNRRINRYKLEGRLEEKLFSFANVSESEFMEETDSEDSPKESDEASSNGSQMEEEEEEGEINVSEQSPADVKKSSKLCFSRIFKISSLLLILFTVFLSICIVNVHDPNIFKRPSSLTMEDPSEIFEFAKTSFNVLVGKLEVWHGNSISFISDVVFNFRGGPPLIHYHNQSEFFNGDFNMNEQCLASSHQTVWEEENNLNVTEAMKDRENNISEEPIEKECEEEEGELRQEIGVVTVERESENEEQEQGQEDLLLEIETMNMREIIIENAERESQNEEELEEASFQETVANANEEENELKLEEVSFQETEANANEEENEEAFEESLQEIIEEASANSASGEPEEEYIQEKPEESFKVSSSSDFKFHDQIEQAVTTGETEEEKNTEFQYQSPPVSPPCEHQSDFEVENGGKIVDLIGTETGISRDFTQNTAIIISAILLGLSLIIPARLIYARKSGSKLLSSSEAIAEEQEEEQPLVKEKKMNQSQVEEDEEDDMGVEFCPSETSSFQYSSMREGETKAGKRWSEVQSHSHGRKKMRKNSRRESMASSSLDEYSVSTSASPSYGSFTTYEKIPIKHGNGDEEIVTPVRRSSRIRKQHNNS 912
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 22581580 22585315 + ClCG10G009980.1 Cla10g00958 282617

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla10g00958 912 MobiDBLite consensus disorder prediction 622 640 - -
Cla10g00958 912 MobiDBLite consensus disorder prediction 582 713 - -
Cla10g00958 912 MobiDBLite consensus disorder prediction 1 111 - -
Cla10g00958 912 MobiDBLite consensus disorder prediction 777 877 - -
Cla10g00958 912 MobiDBLite consensus disorder prediction 783 799 - -
Cla10g00958 912 MobiDBLite consensus disorder prediction 1 43 - -
Cla10g00958 912 MobiDBLite consensus disorder prediction 77 92 - -
Cla10g00958 912 MobiDBLite consensus disorder prediction 341 381 - -
Cla10g00958 912 Coils Coil 576 645 - -
Cla10g00958 912 PANTHER TRANSMEMBRANE PROTEIN 1 910 - -
Cla10g00958 912 MobiDBLite consensus disorder prediction 136 153 - -
Cla10g00958 912 MobiDBLite consensus disorder prediction 53 76 - -
Cla10g00958 912 MobiDBLite consensus disorder prediction 889 912 - -
Cla10g00958 912 MobiDBLite consensus disorder prediction 858 877 - -
Cla10g00958 912 MobiDBLite consensus disorder prediction 125 153 - -
Cla10g00958 912 MobiDBLite consensus disorder prediction 656 673 - -
Cla10g00958 912 PANTHER TRANSMEMBRANE PROTEIN 1 910 - -
Cla10g00958 912 MobiDBLite consensus disorder prediction 827 842 - -
Cla10g00958 912 MobiDBLite consensus disorder prediction 362 377 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla10g00958 - - - bhj:120090026 1226.85
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla07g01270 Cla-Chr7:29831878 Cla10g00958 Cla-Chr10:22581580 2.58E-06 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g776 Blo02g00915 . . . . . . Bma12g00305 . . . . . . . . . . . . . . . . Cla10g00958 Cam10g0981 Cec10g1012 . Clacu10g1003 Cmu10g1786 Cre10g1159 . . Cone3ag1049 Cone10ag1065 . . . . . . . . . . . . Sed13g0417 Cmo04g00459 Cmo16g00320 . . . . Cpe14g00250 Cpe01g00385 Bhi11g01098 Tan01g0601 Cmetu07g1160 . Hepe07g0391 Mch10g0405 . . . . . . . . Lsi03g01003 . . Cme07g02214
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005958 3 1 1 1 1 1 2 1 1 0 1 1 2 1 1 2 1 2 2 1 1 1 1 2 1 1 1 1 1 1 37
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla10g00958 Cla_Chr10 FPKM 59.544365 50.693401 58.174095 51.932533 54.701118 55.506668 61.320374 73.556725 86.518883 63.76252