Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla10g00962 ATGAAATTGAGGCTGAGATCCCTAGAGTCCAAGCAAACCCTCAGAATCGAAGTCCCGGATCCATGCACTCTCGATCACCTCAAACAAACGCTCCTCCAAACACTCTCTTCTTCCTTTTCCGCCGATTCTCTTCACCTCTCTCTCAATCGGAAACACGAGCTCCAAGCATCGTCGCCGGAGGATTCGTTGCACTCCTTGGGTATTACTTCAGGTGACCTTGTTTTCTTCACTTTCAAACCTTCCGAGTTTTCCTCTCAGGGAGGTACGTCAATTCAATATTTTCAAACTCCTCTTCCTGGTGCTTCTTCGCAAGTTTCGTCTTCCTCGCTACCGCAGGTTAAAGGAAAGCAAATTCAGGGTATCGATTGTGATCTTAAAAAACCTAGGTTGGAGAATTCGGAGCATGAATCCACGGGACCAGAGTCCTTGGGTGCCGAAATGACTACATCTAGCATGATCGAGGAAGGGGAGAAGCTCTTGGAGTCTGATTGTGAAGAAATGGACGTTGAAGAAGAGCCAACCGTAGTTGTGGAAAAGAAATGTTCGAGGCCAATCTTTCTGAGGAGAGTTCTGAAGGAGGAGTTAGGCTATGATCGTAATGCTCACAAACTTTTGGTAACTGCTGTTCACGCAGTACTTTTGGAGTCTGGATTTGTGCTGATTAATCCTAATTTAGGTTCTGAGGACAATCCTTTTCGTATGCCGGAAGATTGGCCTTCCCCATCGTTTACGATGTCACTTTGGTACACTCTACCTGAACTTTTGACTGGGGGGGAAAAGAATTCTACCATGACTGAAGTAGTTTTATTGAAGTTTCAGAGTTTGGGGCACTTTGTTAATGTTTATGGGTCTCTTAACTGCAGTAGAAGATCTAGCGTGTATCGTGTATCTTTGGATGAGAGAAAATTTGCACCGAATCTTGATCTGATTTGGGTGGATTCAGTATCCAGTTACATAATGGATGAAGAAGAAGGGAACCCAGAGAAACAAGTTTTTGAATTCTGGAAGATAGTGAAGGATGCTCTTGCATTGCCACTCTTGATTGATATCTGTGAAAAAACTGGTTTACCACCTCCTGCAAGCTTTATGCTACTTCCAGCTGATGTGAAACTGAAGATTTTAGAGGCTCTTCCAGGTGTGGACATTGGAAGAGTTGAATGTGTGTGTACTGAATTGCGTTACTTGGCTTCTAGCAATGAGCTGTGGAAGATGAAGTTCAATCAAGAGTTTGGTTTGGAGGATGGTGTTTCAGGAAACAGGCTTTGGAAGCCAAAATTTGTTGAATATTATGAGAAAGAAAAGCTGAGAAACAGGAGAACTAGCTATGTGAGGGATGTTGTTAGTTTTGGGCGGCGGCGTCGACCCCCTTACCCCTTTCCAGTTCCTCATATAATTGGGGGAGATTATGACATTGTGCCTGGTATCAGGCTCCCTGGATATGGAGTTCCTGGACAATCATTACCTCGGATTCCACGGCGACACATTTTCATGCCACATTATGATTTGAGAGGACGATGA 1518 44.2 MKLRLRSLESKQTLRIEVPDPCTLDHLKQTLLQTLSSSFSADSLHLSLNRKHELQASSPEDSLHSLGITSGDLVFFTFKPSEFSSQGGTSIQYFQTPLPGASSQVSSSSLPQVKGKQIQGIDCDLKKPRLENSEHESTGPESLGAEMTTSSMIEEGEKLLESDCEEMDVEEEPTVVVEKKCSRPIFLRRVLKEELGYDRNAHKLLVTAVHAVLLESGFVLINPNLGSEDNPFRMPEDWPSPSFTMSLWYTLPELLTGGEKNSTMTEVVLLKFQSLGHFVNVYGSLNCSRRSSVYRVSLDERKFAPNLDLIWVDSVSSYIMDEEEGNPEKQVFEFWKIVKDALALPLLIDICEKTGLPPPASFMLLPADVKLKILEALPGVDIGRVECVCTELRYLASSNELWKMKFNQEFGLEDGVSGNRLWKPKFVEYYEKEKLRNRRTSYVRDVVSFGRRRRPPYPFPVPHIIGGDYDIVPGIRLPGYGVPGQSLPRIPRRHIFMPHYDLRGR 505
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 22612204 22613721 - ClCG10G010030.1 Cla10g00962 282621

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla10g00962 505 Gene3D - 363 438 - -
Cla10g00962 505 ProSiteProfiles F-box domain profile. 359 405 IPR001810 GO:0005515
Cla10g00962 505 PANTHER F-BOX PROTEIN SKIP22 1 503 - -
Cla10g00962 505 Pfam Nuclear pore localisation protein NPL4 13 76 IPR024682 -
Cla10g00962 505 Gene3D - 1 78 - -
Cla10g00962 505 SUPERFAMILY F-box domain 355 416 IPR036047 GO:0005515
Cla10g00962 505 SMART fbox_2 365 405 IPR001810 GO:0005515
Cla10g00962 505 MobiDBLite consensus disorder prediction 126 145 - -
Cla10g00962 505 PANTHER F-BOX PROTEIN SKIP22 1 503 - -
Cla10g00962 505 Gene3D - 182 362 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla10g00962 K10293 FBXO7; F-box protein 7 - csv:101220545 842.417
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g767 Blo02g00918 . . . . . . . . . . . . . . . . . . . . . . . Cla10g00962 Cam10g0985 Cec10g1016 . Clacu10g1007 Cmu10g1790 Cre10g1163 . . Cone3ag1045 Cone10ag1061 . . . . . . . . . . . . Sed07g1148 Cmo04g00463 Cmo16g00325 . . . . Cpe14g00254 . Bhi11g01103 Tan01g0606 Cmetu07g0362 . . Mch10g0409 . . . . . . . . Lsi03g01007 . . Cme07g02210
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009275 1 1 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 1 1 1 1 1 1 1 1 1 1 1 1 34
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla10g00962 Cla_Chr10 FPKM 26.70314 28.890825 31.681873 31.901211 24.698778 28.146847 26.07514 47.592751 48.092541 45.828144