Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla10g00969 ATGTCTCTCTCTCATGACCATTCCGCCACTTCTTCCTCCTCCTCCGGCGCCGGAAACCACACTCCCGCGGACTTCCTCTGTTCCACCGCGGCCGACTTCCCGATCTCCGATGACTCCGCCATCTTCAATCTTCTTCAATCGGAGCTCGACCACATGCCCCGCCGCGACTACGTCCGCCGGTGCCGTGACCAGTCGATCGACGTCACCGCCCGTCAAGACTCCATCAACTGGATCTTGAAGGTTCACGCGCACTACAATTTCAAACCAGTGACTGCGATTCTCTCCGTTAATTACTTCGATCGCTTCCTCTCCTGCAATTTCCTTCCACGGCGGAATGTATGGGCGTTTCAGCTTCTATCGGTGGCGTGTTTGTCTTTAGCAGCGAAAATGGAGGAACCTCAAGTTCCATTGATTTTGGACCTTCAAATCTTTGAACCTAAGTTCGTCTTCGAGCCCAAAACGGTTCAGAGAATGGAGCTTTGGGTTATGTCTATTCTCAATTGGAGATTACGCGCCGTCACGCCTTTCGATTTTCTCCACCACTTCATCTCCGATCTTCCTTCTTCTTCCGCCGCAGACGGCGATGATGGCGACGGTCACGACTCTCATCGCCTCTTCTCAACTACTTCCGATCTCATTCTCAGCACCACTCGCGTGATCGATTTCTTGGGGTTCCCGCCGTCCACCATTGCTGCCGCTGCCGTTCTCTGCGCCGCTGGTGAACGATTGGATTCTCCGGCGGGTTCTAGCCATTTCTTTGCCGCGAACAGAGTGGAAATGGTGAGAAGCTGTCACCAACTAATGGAGGAGTACGTGATTGAAACGTGTCCAGCAGAACTCCGAAAACAGCGGACGGGAGGAGCCGAGCAGCCGGCGCCACCGAGTCCAGTCGGTGTGCTCGACGCGGCTGCATGCAGTAGCTGTGACACACACTTGGAAAATCCCGGCTCCACCAGCCACGAAGCCCCAGACGAGCCGCCGACAAAGAGGCTTCGCTCCTCTGCGCCGGATGTACAGGAGCAGTAG 1026 55.46 MSLSHDHSATSSSSSGAGNHTPADFLCSTAADFPISDDSAIFNLLQSELDHMPRRDYVRRCRDQSIDVTARQDSINWILKVHAHYNFKPVTAILSVNYFDRFLSCNFLPRRNVWAFQLLSVACLSLAAKMEEPQVPLILDLQIFEPKFVFEPKTVQRMELWVMSILNWRLRAVTPFDFLHHFISDLPSSSAADGDDGDGHDSHRLFSTTSDLILSTTRVIDFLGFPPSTIAAAAVLCAAGERLDSPAGSSHFFAANRVEMVRSCHQLMEEYVIETCPAELRKQRTGGAEQPAPPSPVGVLDAAACSSCDTHLENPGSTSHEAPDEPPTKRLRSSAPDVQEQ 341
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 22769980 22773643 - ClCG10G010100.1 Cla10g00969 282628

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla10g00969 341 Gene3D - 43 246 - -
Cla10g00969 341 CDD CYCLIN 71 160 IPR013763 -
Cla10g00969 341 SUPERFAMILY Cyclin-like 34 170 IPR036915 -
Cla10g00969 341 ProSitePatterns Cyclins signature. 71 102 IPR006671 -
Cla10g00969 341 PANTHER CYCLINS 1 324 IPR039361 -
Cla10g00969 341 Pfam Cyclin, C-terminal domain 173 274 IPR004367 -
Cla10g00969 341 Pfam Cyclin, N-terminal domain 43 170 IPR006671 -
Cla10g00969 341 PANTHER CYCLIN-D2-1-LIKE 1 324 - -
Cla10g00969 341 SMART cyclin_7 76 164 IPR013763 -
Cla10g00969 341 Gene3D - 54 171 - -
Cla10g00969 341 MobiDBLite consensus disorder prediction 308 341 - -
Cla10g00969 341 SMART Cyclin_C_2 173 308 IPR004367 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla10g00969 K18810 CYCD1_2_4; cyclin D1/2/4, plant - csv:101219121 517.694
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla08g01149 Cla-Chr8:24274694 Cla10g00969 Cla-Chr10:22769980 1.17E-57 dispersed
Cla08g01590 Cla-Chr8:28591192 Cla10g00969 Cla-Chr10:22769980 3.13E-37 dispersed
Cla09g02013 Cla-Chr9:37717358 Cla10g00969 Cla-Chr10:22769980 8.13E-55 dispersed
Cla10g00969 Cla-Chr10:22769980 Cla01g01805 Cla-Chr1:32976927 1.33E-69 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g725 Blo02g00926 Blo03g00066 . . Bpe07g00284 . Bma05g00646 . . . . . . . . . . . . . . . . . Cla10g00969 Cam10g0993 Cec10g1023 Cco10g0985 Clacu10g1013 Cmu10g1798 Cre10g1170 . . Cone3ag1037 Cone10ag1053 . . . . . . . . . Bpe05g00467 . . Sed06g1605 Cmo04g00470 Cmo16g00330 . . . . Cpe14g00259 Cpe01g00393 Bhi11g01121 Tan01g0618 Cmetu10g0407 . Hepe07g0403 Mch10g0416 . . . . . . . . Lsi03g01011 . . Cme07g02202
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004759 1 1 2 2 2 1 3 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 1 1 40
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla10g00969 Cla_Chr10 FPKM 35.5765 40.850002 0.090053 0.0 3.259227 2.644669 3.50959 0.0 0.0 0.127147