Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla10g00975 ATGGGTGCTCCGAAGCAGAAATGGACTAGTGAAGAAGAAGCAGCCCTGAAGGCTGGAGTCGTTAAGCATGGAGCAGGAAAGTGGCGAACGATACTTAAGGATCCTGAATTCAGCAGTGTACTGTATCTTCGTTCAAATGTTGATCTCAAGGACAAGTGGAGGAATATGAGTGTCATGGCTAATGGCTGGGGATCCCGAGAGAAGGCCAGGTTAGCACTTAAGAGATTACATGCTCCTAAAAAAGATGAGAACACTGTGGCTCAAAGTGTTGCTATCCAGAGTGAAGATGAATTGCCAGAAGCGAAGTCTGTTTCTCTTTCCTCAGATGTCAAGCAGATAACTGGTCCAAAGCGATCTAATGTAAGAAAGGAAGAGGAGGAAGAAGACGAAGAAGAAGAAAAAGAAGTAGAAAGAATAGAGAGAGATGCAAGATATGATTGTCATAGGTTAGACAATCTTATAATTGAGGCAATTACTACCCTGAGGGAACCTGGTGGCTCTAATAAGACAAAGATTACCTCATATATAGAGGATCAATACTGGGCACCTCCAGACTTCAAGAGGTTGTTATCATCAAAATTGAAGTTCCTAACAGCTAGTCGTAAATTGGTCAAGGTTAAACGAAAATATAGGCTTCCTCCGGTGGCACCTTCAGAGAGAAGGAGCTCTATGTTATTGTTGGACGACCAGCAAAGAGCTTCTATGAGAGCTGACAAGGACGAAATGTGTATCCTTTCGAAAGCTCAAATCGATCTCGAAATAGCCAAGATGAGGACCATGACTTCCCAAGAGGCAGCGGCAGCTGCTGCTCGAGCAGTTGCAGAAGCAGAAGCAGCAATAGCAGAAGCAGAAGAGGCAGCAAGGGAAGCCGAGGCAGCTGAGGCTGATGCAGAAGCAGCCCAATCATTTGCAGAAGCTGCAATGAAGACACTGAAAGGAAGAAATCTCCCGAAGATGGTGAAACTCTATTATTGTATTATTTATCCCGTTGAAGTTGCATTAGCATTTACTTCTTTGTTCTTATTCCATTGGGTTTATGAGTCATTAAGTTTGATCCGTTTATCATAA 1068 43.35 MGAPKQKWTSEEEAALKAGVVKHGAGKWRTILKDPEFSSVLYLRSNVDLKDKWRNMSVMANGWGSREKARLALKRLHAPKKDENTVAQSVAIQSEDELPEAKSVSLSSDVKQITGPKRSNVRKEEEEEDEEEEKEVERIERDARYDCHRLDNLIIEAITTLREPGGSNKTKITSYIEDQYWAPPDFKRLLSSKLKFLTASRKLVKVKRKYRLPPVAPSERRSSMLLLDDQQRASMRADKDEMCILSKAQIDLEIAKMRTMTSQEAAAAAARAVAEAEAAIAEAEEAAREAEAAEADAEAAQSFAEAAMKTLKGRNLPKMVKLYYCIIYPVEVALAFTSLFLFHWVYESLSLIRLS 355
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 22908811 22915315 + ClCG10G010150.2 Cla10g00975 282634

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla10g00975 355 Gene3D - 146 222 IPR036388 -
Cla10g00975 355 SUPERFAMILY Winged helix DNA-binding domain 146 220 IPR036390 -
Cla10g00975 355 PANTHER SINGLE MYB HISTONE 4 1 319 IPR044597 GO:0003691
Cla10g00975 355 SUPERFAMILY Homeodomain-like 2 70 IPR009057 -
Cla10g00975 355 SMART h15plus2 143 209 IPR005818 GO:0000786|GO:0003677|GO:0006334
Cla10g00975 355 Pfam Myb-like DNA-binding domain 5 55 IPR001005 -
Cla10g00975 355 Coils Coil 266 303 - -
Cla10g00975 355 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 1 33 IPR017930 -
Cla10g00975 355 Pfam linker histone H1 and H5 family 151 207 IPR005818 GO:0000786|GO:0003677|GO:0006334
Cla10g00975 355 Gene3D - 2 59 - -
Cla10g00975 355 PANTHER TELOMERE REPEAT-BINDING FACTOR 1 1 319 - -
Cla10g00975 355 ProSiteProfiles Linker histone H1/H5 globular (H15) domain profile. 146 214 IPR005818 GO:0000786|GO:0003677|GO:0006334
Cla10g00975 355 SMART sant 4 59 IPR001005 -
Cla10g00975 355 Coils Coil 120 142 - -
Cla10g00975 355 MobiDBLite consensus disorder prediction 92 137 - -
Cla10g00975 355 CDD SANT_TRF 6 56 - -
Cla10g00975 355 ProSiteProfiles Myb-like domain profile. 5 57 IPR001005 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla10g00975 K09422 MYBP; transcription factor MYB, plant - csv:101218411 481.1
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla10g00975 Cla-Chr10:22908811 Cla07g01320 Cla-Chr7:30378278 1.17E-33 dispersed
Cla01g01722 Cla-Chr1:32141475 Cla10g00975 Cla-Chr10:22908811 7.45E-82 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g722 . Blo03g00069 Bda06g01187 . Bpe07g00280 . . Bma12g00288 . . . . . . . . . . . . . . . . Cla10g00975 Cam10g0998 Cec10g1028 Cco10g0991 Clacu10g1019 Cmu10g1802 Cre10g1176 . . Cone8ag0167 Cone12ag0173 . . . . . . . . . . . . . Cmo04g00473 Cmo16g00332 . . . . Cpe14g00260 Cpe01g00396 Bhi11g01125 . . . . . . . . . . . . . Lsi03g01014 . . Cme07g02198
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cla10g00975 . 1 320 Single Myb Histone (SMH) Gene Family AT1G49950 60.9 3.1e-76 282.3
Cla01g01722 . 1 249 Single Myb Histone (SMH) Gene Family AT1G49950 52.8 1.1e-62 237.3
Cla01g01722 . 1 249 Single Myb Histone (SMH) Gene Family AT5G67580 52.6 3.7e-66 248.8
Cla01g01722 . 1 249 Single Myb Histone (SMH) Gene Family AT3G49850 51.0 4.1e-57 218.8
Cla07g01320 . 1 271 Single Myb Histone (SMH) Gene Family AT1G17520 52.1 1.9e-67 253.1
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005794 2 4 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 2 1 1 1 1 1 1 1 1 3 2 1 39
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
61870 PF00538 Linker_histone 2.00E-07 CL0123 Cla TF
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla10g00975 Cla_Chr10 FPKM 5.319427 4.490331 9.478957 9.463524 5.214092 5.312593 5.847435 13.671726 13.87696 14.598902