Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla10g00975 ATGGGTGCTCCGAAGCAGAAATGGACTAGTGAAGAAGAAGCAGCCCTGAAGGCTGGAGTCGTTAAGCATGGAGCAGGAAAGTGGCGAACGATACTTAAGGATCCTGAATTCAGCAGTGTACTGTATCTTCGTTCAAATGTTGATCTCAAGGACAAGTGGAGGAATATGAGTGTCATGGCTAATGGCTGGGGATCCCGAGAGAAGGCCAGGTTAGCACTTAAGAGATTACATGCTCCTAAAAAAGATGAGAACACTGTGGCTCAAAGTGTTGCTATCCAGAGTGAAGATGAATTGCCAGAAGCGAAGTCTGTTTCTCTTTCCTCAGATGTCAAGCAGATAACTGGTCCAAAGCGATCTAATGTAAGAAAGGAAGAGGAGGAAGAAGACGAAGAAGAAGAAAAAGAAGTAGAAAGAATAGAGAGAGATGCAAGATATGATTGTCATAGGTTAGACAATCTTATAATTGAGGCAATTACTACCCTGAGGGAACCTGGTGGCTCTAATAAGACAAAGATTACCTCATATATAGAGGATCAATACTGGGCACCTCCAGACTTCAAGAGGTTGTTATCATCAAAATTGAAGTTCCTAACAGCTAGTCGTAAATTGGTCAAGGTTAAACGAAAATATAGGCTTCCTCCGGTGGCACCTTCAGAGAGAAGGAGCTCTATGTTATTGTTGGACGACCAGCAAAGAGCTTCTATGAGAGCTGACAAGGACGAAATGTGTATCCTTTCGAAAGCTCAAATCGATCTCGAAATAGCCAAGATGAGGACCATGACTTCCCAAGAGGCAGCGGCAGCTGCTGCTCGAGCAGTTGCAGAAGCAGAAGCAGCAATAGCAGAAGCAGAAGAGGCAGCAAGGGAAGCCGAGGCAGCTGAGGCTGATGCAGAAGCAGCCCAATCATTTGCAGAAGCTGCAATGAAGACACTGAAAGGAAGAAATCTCCCGAAGATGGTGAAACTCTATTATTGTATTATTTATCCCGTTGAAGTTGCATTAGCATTTACTTCTTTGTTCTTATTCCATTGGGTTTATGAGTCATTAAGTTTGATCCGTTTATCATAA 1068 43.35 MGAPKQKWTSEEEAALKAGVVKHGAGKWRTILKDPEFSSVLYLRSNVDLKDKWRNMSVMANGWGSREKARLALKRLHAPKKDENTVAQSVAIQSEDELPEAKSVSLSSDVKQITGPKRSNVRKEEEEEDEEEEKEVERIERDARYDCHRLDNLIIEAITTLREPGGSNKTKITSYIEDQYWAPPDFKRLLSSKLKFLTASRKLVKVKRKYRLPPVAPSERRSSMLLLDDQQRASMRADKDEMCILSKAQIDLEIAKMRTMTSQEAAAAAARAVAEAEAAIAEAEEAAREAEAAEADAEAAQSFAEAAMKTLKGRNLPKMVKLYYCIIYPVEVALAFTSLFLFHWVYESLSLIRLS 355
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 22908811 22915315 + ClCG10G010150.2 Cla10g00975 282634
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla10g00975 355 Gene3D - 146 222 IPR036388 -
Cla10g00975 355 SUPERFAMILY Winged helix DNA-binding domain 146 220 IPR036390 -
Cla10g00975 355 PANTHER SINGLE MYB HISTONE 4 1 319 IPR044597 GO:0003691
Cla10g00975 355 SUPERFAMILY Homeodomain-like 2 70 IPR009057 -
Cla10g00975 355 SMART h15plus2 143 209 IPR005818 GO:0000786|GO:0003677|GO:0006334
Cla10g00975 355 Pfam Myb-like DNA-binding domain 5 55 IPR001005 -
Cla10g00975 355 Coils Coil 266 303 - -
Cla10g00975 355 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 1 33 IPR017930 -
Cla10g00975 355 Pfam linker histone H1 and H5 family 151 207 IPR005818 GO:0000786|GO:0003677|GO:0006334
Cla10g00975 355 Gene3D - 2 59 - -
Cla10g00975 355 PANTHER TELOMERE REPEAT-BINDING FACTOR 1 1 319 - -
Cla10g00975 355 ProSiteProfiles Linker histone H1/H5 globular (H15) domain profile. 146 214 IPR005818 GO:0000786|GO:0003677|GO:0006334
Cla10g00975 355 SMART sant 4 59 IPR001005 -
Cla10g00975 355 Coils Coil 120 142 - -
Cla10g00975 355 MobiDBLite consensus disorder prediction 92 137 - -
Cla10g00975 355 CDD SANT_TRF 6 56 - -
Cla10g00975 355 ProSiteProfiles Myb-like domain profile. 5 57 IPR001005 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla10g00975 Cla-Chr10:22908811 Cla07g01320 Cla-Chr7:30378278 1.17E-33 dispersed
Cla01g01722 Cla-Chr1:32141475 Cla10g00975 Cla-Chr10:22908811 7.45E-82 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
61870 PF00538 Linker_histone 2.00E-07 CL0123 Cla TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla10g00975 K09422 - csv:101218411 481.1