Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla10g00976 ATGAACATTTTCAAAGCTTTCAGACTCCTTTTGCTTCCTTTAATTTTGATATTTTCAGGGAAATCCATTATTACCATCCAAGGTTTCTCCTATGATTATTCTGCCACAACCAAGGCAAGTTGTTTGGCAAAGCCAAGGAGGGTTTATAATGGGGGAGGAATCATAGTGAATCCAGAGTTCAACAATGGAATTGAGGGTTGGAAAGTGTTTGGAGGAGGAGAAATAAAGCAAGGGTGGTTGAAACAAGGGAGTCACATCAATACCTTCATTGTAGCTCACAAGAGGACTCTCCCAACGGATACTTTCCATCAATTGGTTCACCTCCAACATGGACACCTTTATAGTTTCTCTGGTATCGTCGTTCGTTCTTCAAAATCTTGGGTTCGATTAAGTGAGGGAAATGCACCTGTGGCTGTTCTATTCAGAAATAGTAAAGGGGGTCAGATTCTACATGGTGGGGAAACCATGGCCAAACATGGGTGCTGGAGTTTGCTCAAAGGTGGCATTGTCTCTAATTTTACAGGCCAAGCTGAGGTTATTTTTGAGAGTACAAATACAGCAGTGGAAATCTGGGTTGATAATGTCTCACTACAGCCATTTACAAGGGAGCAATGGCGATCTCACCAAGACAAAATCATTAACAAGGTGAGGAAAAGCAAGGTGAGGCTGCAAATAACTCAAGCAGACAACAGGAGACTAGCAGGTGCAAAAGTCTTCATTGACCAGAAAAAACCAAACTTCCCATTTGGGGCAGGAATGAACTACCACATTCTCCTCAGCAAAGAATACCAACAGTGGTTTGCATCGAGATTTTCCTATGCCACTTTCACCAATGAACTTAAATGGTATAGCACTGAGAAAGTAAGAGGCCAAGAGAACTACACTATCCCTGATGCAATGCTTGAGTTTGCCCAACAACATGGTATTTCAGTAAGAGGACACAACATTTTCTGGGACAATCCCAAATTCCAGCCACAATGGGTCAAGTCACTCTCCCCTGAAGATTTGAAGGAAGCAGCCGACAGAAGAATCAACTCCGTGGTTAAGAGATATTCTGGAAAGTTTATCCATTGGGATGTCGTGAACGAAAACGTGCACTTCAGATTCTTTGAGGACAAACTCGGTGAAAATGCCTCTGCAGAGTACTTCAACATAGCACATACACTTGACAATAACACACTTCTTTTCATGAATGAATACAATACCATGGAACACGATTACGAAAAGACAGCAACCCCAGCTAACTTCAGAAAGAAACTCCTCGAAATCCTGTCGTATCCCGGGAACCAAAACATCCCAGCAGGAATCGGCTTGCAGGGCAACTTCGGCCCTGCTGCACCCAACCTGCCATACATGAGATCCGCTTTGGACCTTTTAGGATCAACAGGCTACCCCATATGGATCACAGAAGTGTTTGTTCACGAAACTCCAGATCAGGCACAATACTATGAGGAAGTTCTAAGAGAAGGATACTCACATCCTGCAGTGAAGGGGATAATCACATTTGCCGGCCCAGAATCAGCAGGTTTCACTACTCTACCGCTTGTGGATATGAATTTCAAGAACACCCCAGCAGGAGATGTTGTCGATAAGCTTTTGGCTGAATGGAAATCTCCCAGCTTTGAAATTACAGCCGATGATGAAGGTTTTGTTGATGCTTCGTTGTTCCATGGAGATTACAATGTCACAGTGCAACACCCTCGAACCAATTCCTCCATTTCTGTTAGTATTAGAGTGACTGAAGAGGCCGCTCATCGGACCTTGAATGTCCAACTCCGTGATAATTGA 1788 43.51 MNIFKAFRLLLLPLILIFSGKSIITIQGFSYDYSATTKASCLAKPRRVYNGGGIIVNPEFNNGIEGWKVFGGGEIKQGWLKQGSHINTFIVAHKRTLPTDTFHQLVHLQHGHLYSFSGIVVRSSKSWVRLSEGNAPVAVLFRNSKGGQILHGGETMAKHGCWSLLKGGIVSNFTGQAEVIFESTNTAVEIWVDNVSLQPFTREQWRSHQDKIINKVRKSKVRLQITQADNRRLAGAKVFIDQKKPNFPFGAGMNYHILLSKEYQQWFASRFSYATFTNELKWYSTEKVRGQENYTIPDAMLEFAQQHGISVRGHNIFWDNPKFQPQWVKSLSPEDLKEAADRRINSVVKRYSGKFIHWDVVNENVHFRFFEDKLGENASAEYFNIAHTLDNNTLLFMNEYNTMEHDYEKTATPANFRKKLLEILSYPGNQNIPAGIGLQGNFGPAAPNLPYMRSALDLLGSTGYPIWITEVFVHETPDQAQYYEEVLREGYSHPAVKGIITFAGPESAGFTTLPLVDMNFKNTPAGDVVDKLLAEWKSPSFEITADDEGFVDASLFHGDYNVTVQHPRTNSSISVSIRVTEEAAHRTLNVQLRDN 595
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 22939815 22945907 - ClCG10G010240.2 Cla10g00976 282635

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla10g00976 595 Gene3D - 49 198 - -
Cla10g00976 595 ProSiteProfiles Glycosyl hydrolases family 10 (GH10) domain profile. 234 532 IPR001000 GO:0004553|GO:0005975
Cla10g00976 595 SMART glyco_10 280 533 IPR001000 GO:0004553|GO:0005975
Cla10g00976 595 PANTHER GLYCOSYL HYDROLASE 38 591 IPR044846 GO:0004553|GO:0005975
Cla10g00976 595 Gene3D Glycosidases 236 546 - -
Cla10g00976 595 Pfam Glycosyl hydrolase family 10 244 499 IPR001000 GO:0004553|GO:0005975
Cla10g00976 595 SUPERFAMILY (Trans)glycosidases 232 538 IPR017853 -
Cla10g00976 595 PANTHER HYDROLYZING O-GLYCOSYL COMPOUNDS, PUTATIVE-RELATED 38 591 - -
Cla10g00976 595 SUPERFAMILY Galactose-binding domain-like 52 198 IPR008979 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla10g00976 - - - csv:101222433 993.03
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla02g01154 Cla-Chr2:24881466 Cla10g00976 Cla-Chr10:22939815 1.48E-119 dispersed
Cla05g01811 Cla-Chr5:30042832 Cla10g00976 Cla-Chr10:22939815 1.26E-52 dispersed
Cla10g00976 Cla-Chr10:22939815 Cla02g00685 Cla-Chr2:7926946 7.95E-171 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g716 . . . . . . . . . . . . . . . . . . . . . . . . Cla10g00976 Cam10g0999 Cec10g1029 Cco10g0992 Clacu10g1020 Cmu10g1803 Cre10g1177 . . . . . . . . . . . . . . . . . Cmo04g00475 . . . . Car19g00407 . Cpe01g00397 . . . . . . . . . . . . . . Lsi03g01015 . . Cme07g02196
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002470 0 2 1 0 1 1 1 1 1 2 1 2 3 2 2 4 2 3 4 1 2 3 2 4 2 2 2 4 2 3 60
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla10g00976 Cla_Chr10 FPKM 3.343536 3.491877 3.016479 3.221256 11.304683 10.786168 13.211551 1.757492 1.365584 1.375961