Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla10g00979 ATGGAGTTCACAATCACAATTCCCCGAATCCCCCAAAATTTCTCCCCAATTCACAGAACCCTAACTAAAATCCACGCCTCTTCCTCATCCAAATACCCTAATTCACAATTACCCCTTCCATCAAAATCCCTACTCACTCCAAGAGGCGAAAACATTCCGACGATGTCGGAGATTCTGGCGGCGGGCGAGGCCCAGAATCTGCACCTCCGGCTGCAAACTTTGGGGCCATTTTTTCGAATAACAGCGAAAAGCTTGGAATCGCAGCGAGAGGTCGGGAAGGCGGAGGGTTTGGTAAGAGTGTGGTTGCGAGGGAGAATTCTTCATCTGGATTCGATTCGATTGAACAGAGAAAGCCTGGGAATGGAGAAATCGATCTTCGGACTCGGATTGTTCATCGGCGCTGTTGCGATTCGGTATGGGTATGATTGCGGGTGCAAGACGGCGGAGTTATTGGCCATCAATGACTCGGATCTTTACCATTCCAAGCTGGTTAGATTCTACACAAGGATTGGGTTCGAGACTATGTATGAAGTGAGTGGTTCAAAGTTAAGAGACATTGGAGACATGTTGGTGTGGGGAGGTATTGGGACTAGAATGGATGCTCACATTGAAGCTCTTCTACTTAAATGGTGTACAAGGTTCAAATCTCCACCATCTAGCAACCCACAAAACTCCCACTCTTTGGTTCAAACTGATCCTCATTAG 705 47.38 MEFTITIPRIPQNFSPIHRTLTKIHASSSSKYPNSQLPLPSKSLLTPRGENIPTMSEILAAGEAQNLHLRLQTLGPFFRITAKSLESQREVGKAEGLVRVWLRGRILHLDSIRLNRESLGMEKSIFGLGLFIGAVAIRYGYDCGCKTAELLAINDSDLYHSKLVRFYTRIGFETMYEVSGSKLRDIGDMLVWGGIGTRMDAHIEALLLKWCTRFKSPPSSNPQNSHSLVQTDPH 234
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 22978969 22981194 + ClCG10G010270.1 Cla10g00979 282638

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cla10g00979 234 PANTHER OS10G0351100-LIKE PROTEIN 25 216 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla10g00979 - - - cmax:111482888 367.081
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi3g707 . . . . . . . . . . . . . . . . . . . . . . . . Cla10g00979 Cam10g1001 Cec10g1031 Cco10g0994 Clacu10g1022 Cmu10g1805 Cre10g1179 . . Cone3ag1028 Cone10ag1044 . . . . . . . . . . . . Sed07g1261 . . . . . . Cpe14g00262 . Bhi11g01132 Tan01g0627 Cmetu07g0869 . Hepe07g0410 Mch10g0424 . . . . . . . . Lsi03g01017 . . Cme07g02192
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008447 5 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 0 1 1 1 2 1 1 35
       

Transcriptome

Select Gene Chr Type da1 da2 da3 da4 da5 da6 da7 da8 da9 da10
Cla10g00979 Cla_Chr10 FPKM 27.31493 26.734932 23.091873 21.820337 35.534603 37.365677 34.012409 30.823502 28.415661 28.281101