Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cla10g00998 ATGGAATCTATAGGAGCCATTTCAGAAAGAGAATGGATATCTCTTAGTGGAGCTTATACTGCTGAAGAGTCTGATTTCATGGCTAATTTGCTCAACAATTATTGTCTTCCAAATGAGCTAAATTCAGATTTAAGCTTGGAAATTCCATCTGCTTATTGGGTTTCTAATGAACCACCACCATCATTGACCATGGCAGCCATGGACGAACCTTCTTATTATTCTTCAGATGCTTCTGATTCTTCCAATATGTATGCCCTTCCACAAGCCAACAACAATAATCATCCTTACACTGTCACTGATTCTCACCCTCTTTGGTTGCCTAATAATGGTGCTTCTTTGTCCTTGGATTTCTCCATGGAGGATGTCCGGAATGCTAATTGCTTGGACGAAGATAACGGTTCGAATATCCGAAAAACAAGACAATGCAGGCTACAACACTCCCCTGCTGACCCTACTGACCCTGCTGCTACACTTGTTGTTGTCAATGGGAAGAGCTCACAACCGAAAAGACGAGCCGAGGACGTGACGGTGGAAGAAGGTACGAGGGACGATAAAGTTGCACCGATGTCGTCGGTCAACAACAACTCGAGGAAGCGACCCCAAAGTTCAGTTGATGTCGAAAAGATGAAAAGGAGCCTGAGGGCACGGAAGAGCTCAAAGATTGCTTCAACTAGCTGCAATGAAGAGGATCGCATTGTTAATCCCAATGGACAGTGCACAAGCAGTTTCAGCTCTGAGGATGACTGTAATGAACCTCAAGAAATCAATGGTGGAATCACTTCTAGCTCAACCTCAAATGGAAAGCCAAGAGCTAGTAGAGGCTCAGCCACAGACCCTCAAAGCCTCTATGCAAGGAAAAGAAGAGAAAGAATCAATGAAAGATTGAGAATCTTACAAAGCCTTGTCCCGAACGGCACAAAGGTTGATATCAGTACAATGCTTGAAGAAGCTGTTCAATATGTGAAGTTTTTGCAGCTTCAAATCAAGTTGTTGAGCTCCGATGATTTATGGATGTATGCACCGATTGCTTACAATGGAATGGACATTGGACTTAACTTGAAGCTGATGAAGCAAGACAATGCATCACAGACAACTTGTGTTCATGGATATAATCAGTATAAGCAAGCCGATCCTTCACGAGTTATTCATAATTACAACTGGGTCAAATGTCTCTTTTCCTTAAGTACCACTGATTCCTCTAGTGAACGACTTTACCCTGAGTGTTGTAGCGTTATGCAGGGGCACTGCAGCGCAGGGTCAGTGCTACGACATGATGCTAGGGGGTACCATGTTATGACGATCAGTGCTGCGGCGCTGCGGCGCTAG 1326 44.12 MESIGAISEREWISLSGAYTAEESDFMANLLNNYCLPNELNSDLSLEIPSAYWVSNEPPPSLTMAAMDEPSYYSSDASDSSNMYALPQANNNNHPYTVTDSHPLWLPNNGASLSLDFSMEDVRNANCLDEDNGSNIRKTRQCRLQHSPADPTDPAATLVVVNGKSSQPKRRAEDVTVEEGTRDDKVAPMSSVNNNSRKRPQSSVDVEKMKRSLRARKSSKIASTSCNEEDRIVNPNGQCTSSFSSEDDCNEPQEINGGITSSSTSNGKPRASRGSATDPQSLYARKRRERINERLRILQSLVPNGTKVDISTMLEEAVQYVKFLQLQIKLLSSDDLWMYAPIAYNGMDIGLNLKLMKQDNASQTTCVHGYNQYKQADPSRVIHNYNWVKCLFSLSTTDSSSERLYPECCSVMQGHCSAGSVLRHDARGYHVMTISAAALRR 441
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
10 23287766 23292117 - ClCG10G010480.2 Cla10g00998 282657
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cla10g00998 441 CDD bHLH_AtIND_like 276 338 - -
Cla10g00998 441 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 275 324 IPR011598 GO:0046983
Cla10g00998 441 MobiDBLite consensus disorder prediction 218 279 - -
Cla10g00998 441 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 275 340 IPR036638 GO:0046983
Cla10g00998 441 MobiDBLite consensus disorder prediction 142 286 - -
Cla10g00998 441 MobiDBLite consensus disorder prediction 167 185 - -
Cla10g00998 441 Pfam Helix-loop-helix DNA-binding domain 285 325 IPR011598 GO:0046983
Cla10g00998 441 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 4 360 - -
Cla10g00998 441 PANTHER TRANSCRIPTION FACTOR BHLH84-LIKE 4 360 - -
Cla10g00998 441 Gene3D - 277 333 IPR036638 GO:0046983
Cla10g00998 441 SMART finulus 281 330 IPR011598 GO:0046983
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cla05g02102 Cla-Chr5:32621736 Cla10g00998 Cla-Chr10:23287766 3.91E-56 dispersed
Cla08g01617 Cla-Chr8:28777277 Cla10g00998 Cla-Chr10:23287766 2.98E-55 dispersed
Cla10g00998 Cla-Chr10:23287766 Cla06g01221 Cla-Chr6:25394004 1.26E-19 dispersed
Cla10g00998 Cla-Chr10:23287766 Cla02g00679 Cla-Chr2:7836120 5.96E-62 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
61871 PF00010 HLH 1.00E-08 No_clan Cla TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cla10g00998 - - csv:101217468 536.954